>PF05559 (331 residues) GVANLPLHGGHAPKWLFKRMVKLTKGIVDVMLYEYDADEFLRRISDPYWFQAFSCVLGFD WHSSGTTTTTCGALKLAIDPEEHGILVAGGKGKASRKTPSDIEKAGDIFSLSTGKIDEMV HASKISAKIDNSCIQDGYQLYHHSFILTEKGEWAVVQQGMNEETRYARRYHWLSESVSEF VEEPHKGICCDKPELQTLDMTAHQSNEARDVSVDLICDNPEHLKKYFKDRTPLVEKSQTH LEDYFNEFRMPRHHPVLDMDLSDREFDVLKRAWEIQPSDYEELVSLEGIGPKKVRALALI SDLVYGSEPSWKDPVKYSFTHGGKDGYPYPV |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | GVANLPLHGGHAPKWLFKRMVKLTKGIVDVMLYEYDADEFLRRISDPYWFQAFSCVLGFDWHSSGTTTTTCGALKLAIDPEEHGILVAGGKGKASRKTPSDIEKAGDIFSLSTGKIDEMVHASKISAKIDNSCIQDGYQLYHHSFILTEKGEWAVVQQGMNEETRYARRYHWLSESVSEFVEEPHKGICCDKPELQTLDMTAHQSNEARDVSVDLICDNPEHLKKYFKDRTPLVEKSQTHLEDYFNEFRMPRHHPVLDMDLSDREFDVLKRAWEIQPSDYEELVSLEGIGPKKVRALALISDLVYGSEPSWKDPVKYSFTHGGKDGYPYPV | |||||||||||||||||||
1 | 5nd1B | 0.15 | 0.14 | 4.77 | 0.68 | SPARKS-K | SEAGVYITGVNGTRFGREELVYLLGFALRHMADAQVIRNVLAQVASLFWLNGEHFLRQLAQQITVNCTGTAMAIYQAVLAGPTGI--------TDGDTTRLQKDLYHHLFADGVQVMQANTRPPVNALAAWGLGMDSFTGPHCAYYFTNVEAAGVVDGGLVTE-GHVSLYTTISAQWNGLQREVHACKT----EDSS--HADIVGAEEVKSAVEWLSSNSVEAHRFRSSAGATEAAGSPGRRAWRRHPYMRRLYTPSDLFVVDRIWKIVMAMR-------AQLMLIDGMGHGFTNLFAYCASTVHGTPMYKKDLVSTLLAHGGAWCNAVNM | |||||||||||||
2 | 3n05A2 | 0.13 | 0.09 | 3.25 | 0.62 | FFAS-3D | -----------------DADEEVYSALVVGL------RAYVAKNGFR------SVLIGL---SGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNEPMFDAYMAEENLQSRLRGTTLMA----------ISNQEGHIVLAPGNKSELGYSTLY---GDSVGAY--GPIKDVY-------------------KTSIFRLAE----WRNRAAAERGQT-----------------PPIPEASITKPDYPVLDAILELYVDRDTGADAIVA-AGYDRELVVKTLMVDTAEYKSAKGFGKDRRLPITNRWREGH---- | |||||||||||||
3 | 2i5hA | 0.19 | 0.08 | 2.63 | 0.33 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------YAYVLD------FMPYGHPDDK---RPIHRREPTLLEVSIRKGKQPVYIKRRLRYEDLTPAAKTELPYVIEHIIKQDEKKYVDFFND----------S-------I-TTRMHQLPGVG-KKMMWAIIEERKKRPFESFEDIAQVKGIQPEKLIVSRIIYEIKNPQ-------TKYKFT----------- | |||||||||||||
4 | 5ifeC | 0.09 | 0.08 | 3.12 | 0.62 | MUSTER | FFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEETIEKIMGNLGAADIDHKLEEQLIDGILYAFTTEDSVMLNG---GTVVNALGKRVKPYLPQI-LNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLG-------VVLYEYLGEEYPEVLG-VIGMHKMTPPIKD----LL-----PRLTPILKNRHEKVQENCIDLVGRSAREWMRICFELLELLKAHKKAIRRATVNTAIGPHDVLATLQNRVCTTVAIAIVAETSPFTVLPALM-NEY-NVQNGVLKSLSFLFEYIGEMGKDYIYAVTPL--MDRDL--H | |||||||||||||
5 | 4w8yA | 0.12 | 0.09 | 3.22 | 0.80 | CNFpred | -------------YIWQFYPVKLKEGVKEFAKSELKKEEEAEKFA--EEFVNLPADTRFPDHAIWTHLDLTSALSVK--DPTLLRIKIVP--------VQPFIANSR-------KQLDLWASSHLLSMLMYKALEVIVDFGPEHVIYPS-----LRDQPFF-------LKFYLGENIGDEI-----LVANLP--NKALAIVSGEAEKIEEEIKKRIRDFLLQLYREAVDW-------------AVENGVVKVDRSEKDSMLKEAYLKIVREYFTVS-EDIYQVTENAGLSDEDVKKWLKFAEKKENSRVLE-RIAIYPLLVK--------- | |||||||||||||
6 | 2pffB | 0.17 | 0.16 | 5.17 | 0.80 | HHsearch-2 | AYSTRPLTLSHVPTASFFIASQLQEQFNKIADDEPTPGKFLGYVSSLVEPSKLLCLLEGNIHAKNYITARIMAKR-PFDKNAQLVAIFGGQGN-TDDYFEELRDLYQTYHV---LVGDLIKFSA---ETLSELIRTT------------LDAEKVFTQGLNILEWLESNTPDKDYLLRSYLK-GATGHSQGL--VTAVAIAETDSWSVRKAILIGVRSLPPSILEDSLENNEGVMLSISNLTDYVNNSHLPAGKQVKNLVPPQSLNLTLRKA--KAPSGLDQSPVYDTFDGSDLRVLSRIVDCIIRLPVKWETTTQFKLTHRNKDGTGVRV | |||||||||||||
7 | 4ci6B2 | 0.12 | 0.09 | 3.23 | 0.59 | Neff-PPAS | -----------TPYYLRELSDLLRTHLSSAATKQLDMGVVLSDLDTMLVALDKAEREGVDKDQLKSFNSLILKTYSVIGAYI------------LSIVEPSLQRIQKHLDHSFSDIGSLMRAHKHLETLLEVLVTLS-------------------QQGQPV-----------SSETYSFLNRLAEAKVTLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTPVVKFGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTADSIPLLIQLGRSSLMDREKLRELTTIAERLNRLEREWM------------------- | |||||||||||||
8 | 3fspA | 0.15 | 0.07 | 2.23 | 0.78 | HHsearch | --------------------------------------------------------------------------------------------------------------FPAR-----EFQRDLL-------------------------DW---------FARERRDLPWRKD------RDPYKVWVSEVMLQ---QTRVETVIPYFETLEALADADEDEVLKAWE------------------GLGY--Y----S--RVRNLHAAVKEVKTKVPDDPDEFSRLKGVGPYTVGAVLSLA---YGVPEPAVDGNRVLSRLFLVTDDAKP- | |||||||||||||
9 | 2gksB2 | 0.10 | 0.05 | 1.91 | 0.68 | SP3 | ---------------------------------------------------PKHKLTGLP--CAG-KSTIAEILATMLQARGRKVTLL---------DGDVVRTHLSR-GLGFSKEDRITNILRVGFVASEIV---------------KHNGVVICALVSPYRSAR--------NQVRNMM---------EEGKFIEVFVAPVEVCEERDV-------KGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRV----DTTKLTPEESALKILEFLKKEGIKD---------------------------------------------------- | |||||||||||||
10 | 1cz1a | 0.10 | 0.08 | 3.15 | 0.78 | PROSPECTOR2 | AQNGNDQSGVPVDEYWTQTLKEAALRILQKHWSTWITEQDFKQISNPIGYWAFQLLDNDPYV-QGQVQYLEKALGWA---RKNNIRVWRDSYNFQNGDNTQLNTIFKKYGGNEYPVLNMDKLKQFFLDGYNSLRQTGSVTP---VIIHDAFQ----------------VFGYWNNFLTVAEGQWNVVVD--------HHHYQVFSGGELSRNINDHISVACNWGWDAKKESALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLD-----ISQWSDEHKTDT---------RRYIEAQLDAFEYTGWKTENAPEWSFYNGPQPVTDRQH | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |