>PF05508 (334 residues) MDFFLAKVSQQAVSFAIRSGIIVTSQFAIKECSRYISSIKGKDRQELQDLQDRLEQKIRI ISPAIDLVEIISARGNTSLESALTLTKNIRHDIQSLGVRVAGLSAQGGGRKRRRSQDEIN AVVQDIKQLLRKIEDAVPFINLAITTSGVNISSNIPHNVSPSRLMQASTLLTAGDTAYSM NPFNPAQIGTTFTLSLYMLFAGHSHRQEHVSAKDLTWQEVVYKCKVKLQRVPLVYDDDQD EDGASRNTNRLRAQSKIDEYCYELCLIEDLDDGRMHEVEEGKQPPGSFDDVEKAGLRTRI PIHQISKIFYTNSGQLLGIEDSSSPILLVKRDLN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDFFLAKVSQQAVSFAIRSGIIVTSQFAIKECSRYISSIKGKDRQELQDLQDRLEQKIRIISPAIDLVEIISARGNTSLESALTLTKNIRHDIQSLGVRVAGLSAQGGGRKRRRSQDEINAVVQDIKQLLRKIEDAVPFINLAITTSGVNISSNIPHNVSPSRLMQASTLLTAGDTAYSMNPFNPAQIGTTFTLSLYMLFAGHSHRQEHVSAKDLTWQEVVYKCKVKLQRVPLVYDDDQDEDGASRNTNRLRAQSKIDEYCYELCLIEDLDDGRMHEVEEGKQPPGSFDDVEKAGLRTRIPIHQISKIFYTNSGQLLGIEDSSSPILLVKRDLN | |||||||||||||||||||
1 | 1f31A | 0.10 | 0.09 | 3.43 | 0.83 | SPARKS-K | VAQWLSTTQFYTIKEGMYKALNYQAQALEEIIKYRYNIYSEKEKDINSKLNEGINQAIDNINNFINGCSVSYLMKKM----IPLAVEKLLDFDNTLKKNLLNYIDENKIGSAEYEKSKVNKLIEMFNKYNSEILNNI---ILNLRLSGYGAKVEVYDGV---------ELNDKNQFKLTSSANSKIRVFLDFSVSFWIRIPKYKNIQNYIHNEYTIWKISIRGNRIIWTLID-----INGKTKSVFFEYNIREDSEYINRWFFVTITNNLNNGKLESNTDIKDIREVIGDIDQFIWMKYFSISNIEERYKIQSGNPLMY---NKEYYMFNAGNK | |||||||||||||
2 | 1s35A | 0.09 | 0.04 | 1.73 | 0.93 | FFAS-3D | -EQAFLQDLDDFQAWLSITQKAVEAEQLLQQHAGIKDEI-DGHQDSYQRVKESLGQRLEGLDTGWDALGRMWESRSHTLAQCLGF-QEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEG---NLYSDKIKEKVQLIEDRHRKNNE---------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 3ghgJ | 0.11 | 0.05 | 1.83 | 0.36 | HHpred | ------------------------------RMKGLIDEVNQDFTNRINKLKNSLFEQKNNKDLIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQH---------IQLLQKNVRAQLVDMKRLEVD---IDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL-PSRDRQHLPLIKMK------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 6ezvX | 0.09 | 0.08 | 3.17 | 0.69 | MUSTER | --TQLNPTQQTTQSAFLATTVITAQCHAILNTQFTPPTVKDDLSKKLDSAKLVAKQWIDDLGPQVSASIPSSVINDATFQASIDAIHELYKADPTANTTVQQASQIMTASQVSGIEATVKGMNKELSDWGVKMQAAHDDLVNGATNIQKTII-DLQTDIENNAIDNNRAAIEKLNKDLVYAQVA---VGVGIFMLVAGVALTVATAGTAA----------AVSGGIAAVGAAGVTWGVLQNQIDDDYDSIAQEQKQKAEDQQQIIALQGLSNA-SSAVVSA------IETSTSV-------LSDFETTWTVFGNEL-KLNNGASMIIMEKVMSD | |||||||||||||
5 | 4aurA | 0.12 | 0.05 | 1.92 | 0.64 | CNFpred | PEHYESRSRINDLKNAATEILKTNVPEVLLVKT------------GMDVVKDIVIQRVTLASRHLDELNT-------FVEKNDEDMHRFSNDIKQSRIEVKRLAGEL--------FEELNLMEKQLMSQLRPLDDIRPFMDDELGYTEDGVGFKLHLRIVDRFFEQSTAVSQRLSDDITRQ--------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 2pffB | 0.12 | 0.11 | 3.83 | 0.58 | HHsearch-2 | FDQVLNCLTEFENCYLIH---ALAAKLTKELIKNYITARPDDYFEELETLSELIRTAEKVFTQGLNILEWLENPSNTPDKDSIPISCPLIGVIQLAHYVVTAKLSYLKTDSWESFFVSVRKAITVLFFIGVRCYEAYPILEDSLENNEGVP----SPMLSISNLTQVQDYVNKTNSHLPAGQVEISLVNGAKNLVLYGLRKAKAPSGL--DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA----SDLINKVKNNVSFNAKDIQIPVYDTFDGSDL-----------RVLSGSISERI-VDCIIRTQFKATH-ILDFGPGGTGVRVITLDIN | |||||||||||||
7 | 3i9wA | 0.08 | 0.06 | 2.27 | 0.83 | Neff-PPAS | WELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNALEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQ------------------------------------------------------------------------------------------ | |||||||||||||
8 | 6f1tX2 | 0.13 | 0.05 | 1.88 | 0.53 | HHsearch | ---------------------------------QHIIRLEQAEIKMLSDRKRELEHRLSATLEENDLL-------QGTVEELQDRVLILERQGHDKDLQLHQ------------SQLELQEVRLSYRQLQGGGGGGGGG--------GGGGGGGGGGGGGGGG--GGGGG-GGGGGGGGGGGGGGGGGGGGGG-------GGGGGGG--GGGGG------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 1st6A | 0.11 | 0.08 | 3.02 | 0.65 | SP3 | FENHAARLGATAEKAAAVGTANKTTVEGIQATVKSARELNQAAYEHFETMKNQWIDNVEKMTGLVDEAI-----------DTKSLLDASEEAIKKDLDKCKVAMANMQPQMLVAGATSIARRANRILLVAKREVEN----------------SEDPKF--REAVKAASDELSKTISPMVMD-AKAVAGNI-------------SDPGLQKSFLDSG-YRILGAVA-KVREAFQPQEPDFPPPPPDLEHLHLTPPPPEEK-----------------DEEFPEQKAGEAINQPMMMAARQL-HDEARK-----------WSSKGNDI------IA | |||||||||||||
10 | 6ezvX | 0.08 | 0.07 | 2.90 | 0.93 | PROSPECTOR2 | TQPTQQTTQSAFLATTLSKKLDSAKLVAKQWIDDLGPQVSASIPSSVINFDATFQASIDAIHELYKADPTASGKDNTTVQQASQIMTALSSQVSGIEATVKGMNKELSDVKMQAAHDDLVNGATNIQKTIIDLQTDIESMNNAID--------------------NNRAAIEKLNKDLVYAQVA---VGVGIFMLVAGVALTVATAGTAAAAAGVTWGVLQNQIDDDYDSIAQEQKQKAEDQQQIIALQGLSNASSAVVSAIETDVVTKLNNGASMQSIIME----------------KVMSDAAKNEWDDAVELAKQLASAKIAIETKELAPA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |