>PF05503 (368 residues) EPKQSAIYTIVSKAIVKSVVKDTNINSEYIENKAKQLCYCNNMSYKESIINNIYSYLEHE INMDDISHLNQILNNLKHQSMYVCNTNEFWRLYNSLTRFTHCKSFFTTCMPTIITTLSMF ITLILSNKLLYAAEMVEYIETYLFSSQKNLSQELADLLDMKYALINLVQYKIFPIILGNK DSAMTPIIFSAGSSNIDYRDDIDKLLNLPVKSDMIQAVYAFLTKKGINTSNNFAEYVAGL KIEELSENNNIDEQKNDETSKEDKQIISIQPLTQEERNSMYAMKLLKDAQKYSKGNVLDG SISSPITKKSIINQIPFSASDIEMFAILEYLYIMRVIASNIKRKNLDCKNQGITLNISSP FKSITIPG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EPKQSAIYTIVSKAIVKSVVKDTNINSEYIENKAKQLCYCNNMSYKESIINNIYSYLEHEINMDDISHLNQILNNLKHQSMYVCNTNEFWRLYNSLTRFTHCKSFFTTCMPTIITTLSMFITLILSNKLLYAAEMVEYIETYLFSSQKNLSQELADLLDMKYALINLVQYKIFPIILGNKDSAMTPIIFSAGSSNIDYRDDIDKLLNLPVKSDMIQAVYAFLTKKGINTSNNFAEYVAGLKIEELSENNNIDEQKNDETSKEDKQIISIQPLTQEERNSMYAMKLLKDAQKYSKGNVLDGSISSPITKKSIINQIPFSASDIEMFAILEYLYIMRVIASNIKRKNLDCKNQGITLNISSPFKSITIPG | |||||||||||||||||||
1 | 5lj3H | 0.14 | 0.12 | 4.26 | 1.08 | FFAS-3D | ---QRENWEMIRSHV-SPIIS--NLTMDNLQESHRDLFQVNILIGRDIICKNVLSALIALLNSDIPDIGETLAKELMLMFVQQFNRKDYVSCGNILQCLSILFLYDVIHEIVILQILLLLLELRLVIAVMKHDMIWEKLRYILQTQELS--STLRESLETLFEIRQKFKKKIYLVLKSSLS----------------GDEAAHKLLKLKIANNLKKSVVDIIIKSSLQESTFSKFYSI--LSERMITFHR---SWQTAYNETFEQNYTQDIEDYETDQLRILGKFWGHL------------ISYEFLPMDCLEESCPQGRIFIKFLFQELVNELDELQLRLNSSKLDGDAEHIRYSIN-FFTAIGLGL | |||||||||||||
2 | 2pffB | 0.16 | 0.15 | 4.87 | 1.28 | HHsearch-2 | EPSKVGQFDQVLNLCLTEFNCYLGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRGEGNAQLVAIFNDDYFEELR-DLYQTYHVL-----VGDLIKFSAETLSELIAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWESFVRKAITVLFFIGVRTSLPPSIL--EDSLENNEGVPSP------------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAVSGPPRKAKDQSRIPFSERFLPVASHSHLLV---PASDLINKDLVK-------NNVSFNAKDIQIPV | |||||||||||||
3 | 2pffB | 0.16 | 0.14 | 4.81 | 1.34 | HHsearch | EPSKVGQFDQVLNLCLTEFCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFVGEGNAQLVAIFTDDYFEELR-DLYQTYHVL-----VGDLIKFSAETLSELIAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWESFFVKAITVLFFIGVRCYEAYP--NTSLPP-SILEDSLENNEGVPS----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAVSGPLRKAKDQSRIPFSERFLPVAFHSHLLV---PASDLINKKNNV----------SFNAKDIQIP- | |||||||||||||
4 | 5mqfT | 0.11 | 0.10 | 3.72 | 0.83 | SPARKS-K | LAYQRMSWEALKKSINGLINKV---NISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHRVQYMIEVMFAVRKDINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCCMLKKEYMESFEGIFKEQYDTIHRLETNYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSILGGLTDELREHL----------------------- | |||||||||||||
5 | 4l3iA | 0.12 | 0.11 | 3.76 | 1.06 | FFAS-3D | EVLAEESIVCLQKALLREIWELIGIPEDQRLQRTEVVKKHEEESLKERLIKSILNTLCSELHVEPKQELKLLQEQDQEDSASVPSLEELNQFRQHVTTL---RETKASRREEFVSIKRQIILCEFERDVVCSLENIATLQKLLLEQKSQNEAVCEGLRTQIRELWDRLQIPEEEREAVATISGSKAKVR------KALQLEVDRLEELKQNKKVIEAIRVEL-----------VQYWDQCFYSQEQRQAFAPFCAEDYTESLLQLDAEIVRLKNYYEVHKELFEGVQKWEETRLFLEFERKASDPNRFTNRGGNLLKEEKQRAKLQKLPKLEELKARIELWEQEHSKAFVNG---------------- | |||||||||||||
6 | 2pffB | 0.14 | 0.12 | 3.99 | 0.67 | HHpred | ---------------------HGSLEHVLLVPTASFFIAS----QLQEQFNKILPETEADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNCLTEFENCYLEGNDI----HALAAKLLQEN-DTTLVKTKELIKYITARI-MAKRPFDKKSNSA-----------LFRAVG--EGNAQLVA---IFGGQGNTDDYFEELRDLYQTYH--VLVGDLIKFSAELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--LLS-IPISCPLIGVIQLAHYVVTAKLLGELRSYLKGAT---GHSQGLVTAETDSWESFFVSVRKAITVLFFIG-----VRCYEANNEGVPSPMLSISAGKQVEISLV-- | |||||||||||||
7 | 5h7cA | 0.13 | 0.12 | 4.27 | 0.64 | MUSTER | KEQQNAFYEILHPNLNEEQRNAFIQSLKDDPSQSANLL---AEAKSLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEAT-----KELVIYIVKILAELAKQSDSELVNEIVKQLAEVAKEATDKIVKILAELAKQSSELVNEIVKQLEEVAKEATDKELVEH-IEKILEELEQQSAFYEILSLPLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEATDKEEVIEKELAELAKQSTDSELVNEIVKQLAEVAKEATDKEL-AELAKQSTDSELVNEIVKQLAEVAKEAKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKE | |||||||||||||
8 | 5h7cA | 0.14 | 0.11 | 3.72 | 0.97 | CNFpred | AEAKSLNVNQAVKQLAEKAKEAT-EVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEA---TDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKE----ATDKELVIYIVKILAELAKQSDSELVNEIVKQLEEVAKEADKELVEHIEKILEELEQQSAFYEILSLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQ-DKEEVIEIVKELAELASTDSELVNEIVKQL--AEVAKEA------------------------TDKELVIYIVKILAELAKQSTDSEL-------------------VNEIVKQLAEVAVIYIVKILAELAKQS------------------------ | |||||||||||||
9 | 2pffB | 0.18 | 0.16 | 5.29 | 1.15 | HHsearch-2 | DAYSTRPLT-----LSHGSLEHVLLVPTASFFIASQLQEQFN---------KILPETEADDEPTTPAELVKFLGY-VSSLVEPSKVGQFDQLNLCLTEFENCYLEGND----IHALAAKLLQEND-TTLVKTKELINYITAAIFGGTDDYFEELRDLYQTYHVLV-GDLIKFSAETLSELIRTTLEKVFTQGLNILEWTPDKDYLLSIPISCPLI-------GV------IQLAHYVVGFTPGELRSYLKGAT-GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIVRCYEAYPNNEGVPSPMLS---ISNLTQEQVDYVNKTNSQSLYGLNL--TLRKAKAPSDKFSNRFLPVASPFHSHLVPA | |||||||||||||
10 | 6ek4A | 0.10 | 0.09 | 3.38 | 0.78 | Neff-PPAS | -----VKTLSQAVKNIWRLSHQQKSGIEIIQEKTLRISLYSRDEAARASVPQLQTVLRQLPPQDYFLTLTEIDTELEDPERNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYNLADM-------------FKDYIPNISDLDKLDLA---NPKKELIKQAIKQGVEIAKKILGNISGLKYIELADARAKDERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAAKLEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLALQYHSMLLS--------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |