Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | TKETFPCPVTCKKQYKLQTQKNKVQKPCSMTGITEGALLHRQLLKECKKTSKLIHLSNLMIQKHPPKRKDAQRNSSSTKHTKKRSRDVSAHSAKKIPAKKKKRASDSSSTSSSSNSSTSKESS |
1 | 1w9rA | 0.16 | 0.15 | 4.87 | 1.03 | MUSTER | | GSHMPEKKVAEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP---------- |
2 | 2otoB | 0.09 | 0.09 | 3.41 | 1.13 | Neff-PPAS | | ANNPAIQNIRLRHENKDLKARLENAEVAGEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNR |
3 | 5voxO | 0.11 | 0.11 | 4.07 | 0.78 | SPARKS-K | | TNAYRTLPINPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDVKPEDFVLNSEKSLKSDFEKSYETLSKNVVPASASVIAEDA |
4 | 5wqlC3 | 0.09 | 0.07 | 2.45 | 0.48 | FFAS-3D | | ------------------------------------PELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRLARLNERFKREGKPELKKLDDLPKDYQEPD-- |
5 | 4fguA2 | 0.06 | 0.02 | 1.08 | 0.23 | HHpred | | -----------LTIMKRKLMN--------TNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASEAEV---------------------------------------------------- |
6 | 2xnxM | 0.08 | 0.07 | 2.85 | 0.89 | MUSTER | | ---------RLEKELEEKKEALELAIDQA----SRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTI---EKAKLEEEKQIS |
7 | 5g55A | 0.10 | 0.03 | 1.21 | 0.35 | CNFpred | | -----------------------------------GTAMLHDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVIS----------------------------------------------- |
8 | 4oliA | 0.08 | 0.03 | 1.27 | 0.47 | HHsearch-2 | | RGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ--------------------------------------------------------------------------- |
9 | 1w9rA | 0.15 | 0.12 | 4.12 | 1.01 | Neff-PPAS | | EKKVEEAKKKAEDQKEEDRRNYPTNTYKTLESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP--------------------- |
10 | 5mzhA1 | 0.13 | 0.07 | 2.26 | 0.40 | HHsearch | | LRYYPPGIILQYER-VMKQKP-IDLL--DLTPDVDVEVLLSQIIRQEPRRPALRQLIHRLIDKMLE--------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|