Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | LSREDLRLLLTEAQAWAAFVAEAHLSREEAEALCARLSELRTSKAPGDDRHQQEQECRALFASTFPQLKDQLEPLTKLIGQLRGLAGRADKVHRYCAITNVVARCTSGVSGAMTIAGLILASFTAGVSVALTGTGLGLGFLSAGIFVITSVVEHEIMSSIEAEANRLESGGSSIKKKLEEDQALPRRSSGEPDIDVFRGCRVICALRVGNNSLGVTDKAIGRIGMLAQIFLGIKSKVMGIGALALGVIFTVGFLVLDMYNIKQDSEELVQGAKSESGEKLRQKAQYLHKVLEELKP |
1 | 5k7vA | 0.14 | 0.11 | 3.95 | 1.00 | SPARKS-K | | ----------IEEVVAEMIDILAESSKKSIEELARAAD--------NKTTEKAVAEAIEEIARLATAAIQLIEALARAISAIAELAKKAIEAIYRLADNHT--TDTFMARAIAAIANLAVTAILAIAALAEEFMARAISAIAELAKKAIEAIYRLADNKFMAAAIEAIALLTLAILAIALLAS---------NHTTE----------------EFMAKAISAIAELAKKAIEAIYRLADNHTSPTYIEKAIEAIEKIARKAIKAIEMLAKNITTEYKEKAKSAIDEIREKAKEAIK |
2 | 4akkA | 0.12 | 0.11 | 4.05 | 1.22 | FFAS-3D | | ---EVVDWFARARQQLHQLAQQGTL-AGQISALVHMLQCLCSGGRLYAAECRAGAALVDEQLTRFSALCWRIACAVWYLPQLAALRKRVRD--REIAAEEATGQFSRIIRHLLALYSFMQGKELAGQERALGALGFALVDRIDGQQPCFDSFQALAQPPQTALFAEQCQASLEIEQLRRVACTRQPPADEGETALR--------WFCAQTQRLEQLRGVEELLIVDLLNAADALVRQQAHELQQLSGQLASLKDALEERKLIEKAKSVYQGMQEEQAQALRKMAMDKNQRMVEIAR |
3 | 3i9wA | 0.10 | 0.09 | 3.35 | 1.10 | Neff-PPAS | | -------------------------TMNMARQLSEASAWELFASADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQ--QGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNE--LRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIED--PGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNI-AQFAQFSSEVSQLVDTIELRNQ |
4 | 6ezvX1 | 0.15 | 0.10 | 3.51 | 1.18 | HHsearch | | VKPDKLDSAKLVAKQWIDDLGPQSGIEATVKGMNKELSDWGVKMQAA---HDDLVNGATNIQKTIIDLQTDIESMNNAIDNNRAAIEKLNKDLVYAQVAVGV-------GIFMLVAGVALTVATAGTAAA--VSG-GIAAVGAAVTWGVLQNQIDDDYDSIAQEQKQKAEDQQQIIALQGLNASSAVVSAIETLSDFETWTKIA-----IETKELAPA--------V--------------------------------------------------------------------- |
5 | 3i9wA | 0.10 | 0.08 | 3.03 | 1.04 | PROSPECTOR2 | | PTMNMARQLADNEKMWQAQGRML---TAQSLKINALLQALREQGFDT----TAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADE--IARLAQGQANNATTSAGATQAGIYDLIEQDQ------------RQAAESALDRLIDID--LEYVNQMNELRLSALRVQQMVMNLGLEQ-----------------------IQKNAPTLEKQLNNAVKILQRRQIRVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNI-AQFAQFSSEVSQLVDTIELRNQ |
6 | 5lm1A | 0.12 | 0.12 | 4.15 | 1.19 | FFAS-3D | | --SEEKAKLLRENEVLDQFMDSMQLVDDAYSHIPPQLMEKCAALSVRPDTVRNLVQSMQVLSGVFTDVEASLKDIRDLLEEDELLEQKFREWAKYMEVHEKASFTNSELHRAMNLHVGNLRLLSGPLDQVRAALPEDKAVLQNLKRILAKV------QEMRDQRVSLEQQLRELIQKDDITASLVTTDHSEMKKLFEEQLKKYDQLKVYLEQNLAAQDRVLCALTEANVQYAAVRRVLSDLDQKWNSTLQTLVASYEAYEDLMK--KSQEG--RDFYADLESKVAALLERTQSLDR |
7 | 2yfaA | 0.06 | 0.04 | 1.98 | 1.02 | Neff-PPAS | | ----------------GSHMGDIGQLNKDLTDLRIARLQYMIANGD----------------------DTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENS-------------------SANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMT-VQGADIVKRSDALYQIQLER-- |
8 | 6ezvX | 0.11 | 0.10 | 3.51 | 1.15 | HHsearch | | DLGPQVSSVINFDATIDAIHELDGKDNTTVQQASQIMTALSSQVSGINKELSDWGVKMQAAHDDLVNGATDIESMNNAIDNNRAAIEKLNKDLVYAQVAVG-------VGIFMLVAGVALTVATAGTAAAVSG-GIAAVGAAG---VTWGVLQNQIDYDSIAQEQKQKAEDQQQIIALQGL--SNA-------SSAVVS--AIETTSVLSDFETTWTVFGNELDD-VVTKLNNGA-----------SMQSIIMEKVMSDAAKNEWDDAVEL-----AKQLASAKIAIETKELAPA- |
9 | 2yfaA | 0.11 | 0.08 | 3.06 | 1.04 | PROSPECTOR2 | | GSHGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAF--------------SKQQAYLATTFPENVKLLGELGDTISAYKLSLNKMRQGYDAT------------------------------RAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRI------------DVRGYIAENS-------SANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMT-VQGADIVKRSDALYQIQL--ER |
10 | 5cwqA | 0.11 | 0.08 | 2.84 | 0.99 | SPARKS-K | | ----------------EELERESEEAERRLQEARKRSEEARERGDLKEEALIEEARAVQELARVACERSEEAERASEKAQRVLEEARKVSEEAREQ-----------------------------GDD---EVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGD-----------------------------DEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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