Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | CSSTNAEDCATNPTAVTTQARCTSMPYTQCYQRVHGTSTERGCLSELSGDEFYNCLTNADDKCKACVGSSCNDEIIPSDRLRCQRCDSDSDSSCHNAPASASICPSYKDGDACVALYENGVTKRGCQTDFSCDAKSKNCQVCS |
1 | 3laqV | 0.18 | 0.16 | 5.26 | 1.78 | SPARKS-K | | ---LQCMQCE--SNQSCLVEECAL-GQDLCRTTVLREVVTRGCAHSEKTNRTMSYRMGSSLTETVCATNLCNRP---RPYLECASCTSLDQ-SCERGREQSLQCR--YPTEHCIEVVTLEDYTRGCGSLPGCPGNYTHCNGGP |
2 | 3laqV | 0.21 | 0.20 | 6.46 | 0.52 | FFAS-3D | | CNRPRPLECDQSCERGREQSLQCRYPTEHCIEVVTDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCNYTHCNGGPFPPNGFQCYSCEGNNTLGCSSEEASLINCR--GPMNQCLVATGLDYTVRGCATASWCCCHGSGCNSPT |
3 | 3laqV | 0.23 | 0.20 | 6.34 | 0.57 | HHpred | | CTSL-DQSCERGRE---QSLQCRYP-TEHCIEVVTLEDYTRGCGSLP------GCPGTTFHFLKCCNYTHCNGGPVPPNGFQCYSCEGNNTLGCSSEEASLINCRG--PMNQCLVATGVSYTVRGCATASWCQGSHV------ |
4 | 3laqV | 0.22 | 0.21 | 6.62 | 1.18 | MUSTER | | CTS-LDQSCERGREQS---LQCRY-PTEHCIEVVTLEDYTRGCGSLPGPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQFQCYSCEGNNTLGCSSEEASLINC--RGPMNQCLVATGLSYTVRGCATASWCPTHLNVSVSCS |
5 | 1ywhA | 0.23 | 0.20 | 6.15 | 2.49 | CNFpred | | CISCGDMSCERGR---HQSLQCRSP-EEQCLDVVTHDRHLRGCGYLP------GCPGSNGHFLKCCNTTKCNEGPILE-GRQCYSCKGQSTHGCSSEETFLIDCRGP--MNQCLVATGTSYMVRGCATASMCQHAH------- |
6 | 3laqV | 0.21 | 0.20 | 6.43 | 1.17 | HHsearch-2 | | CTSLD-QSCERGR---EQSLQCRYP-TEHCIEVVTLEDYTRGCGSLPGCPGTAGFHSQTFHFLKCCNYTHCNGGPVPPNGFQCYSCEGNNTLGCSSEEASLINCRGP--MNQCLVATGRSYTVRGCATASWCQGHVADVSGCN |
7 | 5u8qA6 | 0.17 | 0.12 | 3.92 | 1.61 | Neff-PPAS | | ---------------------ACTENNECC-----HPECLGSCSAPDNDTACVACRHYYYA--GVCVPA-CPPNTYRFEGWRCVDRDF------------CANILSAESSDSEGFVIHDGECMQECPSGFIRNGQSMYCIPCE |
8 | 3laqV | 0.21 | 0.20 | 6.42 | 1.62 | HHsearch | | CTSLD-QSCERGR---EQSLQCRYP-TEHCIEVVTLEDYTRGCGSLPGCPGTAGFHSQTFHFLKCCNYTHCNGGPVPPNGFQCYSCEGNNTLGCSSEEASLINCRGP--MNQCLVATGRSYTVRGCATASWCQGSHVAVSSC- |
9 | 3laqU2 | 0.21 | 0.20 | 6.43 | 1.09 | PROSPECTOR2 | | CASSLDQSCERGREQ---SLQCRY-PTEHCIEVVKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCNYTHCNGGPVLDLQFQCYSCEGNNTLGCSSEEASLINC--RGPMNQCLVATLRSYTVRGCATASWCQGSFPTHLNVS |
10 | 3laqV | 0.22 | 0.20 | 6.16 | 0.43 | SAM | | CTSLD-QSCERGR---EQSLQCRYP-TEHCIEVVTREDYTRGCGSLPGCPGTAGFHNQTFHFLKCCNYTHCNGGPVPPNGFQCYSCEGNNTLGCSSEEASLINCRGP--MNQCLVATGLSYTVRGCATASWC----------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|