Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | LLILASLTVCNLMVSGGQSMSAEDETDRKTIDDIILERAETLLLRSILKKLQDEDGRNDGYYSQPEWVTKRQHPGKRYSDDLEKRQHPGRREEDEDEQYFDVQKRQHPGKREDETHSFLELQKRQHPGKRSTAGHSSDNPILLLSELSKRQHPGKRYLVLHSKRQHPGKRLLEDEDGDSDGDADADGEEDLAEMEKRQHPGKRFWDNSSPDLGTNSPCDVLDPASCSKTS |
1 | 5v3jE | 0.17 | 0.13 | 4.43 | 1.58 | SPARKS-K | | ---------------------------PHKCKECGKAFHTPSQLSHHQKLHVGEKQECGKAFPSNAQLHHRVHTDEKCFELRHQRIHTGEKPHKCKETQLSLHLLTHAGARRFECASQLALHQMSHTGEKPHKCKECGKGFISDSHLHQSVHTGETPYKCKHQRAHSGDKPYKCKECGK-----SFTCTTELFRHQKVHTGDRPH-----------KC-----KECGKAF |
2 | 1tf6D | 0.11 | 0.07 | 2.50 | 0.48 | FFAS-3D | | -----------------------------------------------------SFADCGAAYNKNWKLQLCKHTGEKPFPCKEE--GCEKG--FTSLHHLTRHSLTHTGEKNFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNKVH----------QFSHTQQLPYE---CPHEGCDKRFSLPSRLKRHEKVHAGYPC----------------KKDDSCSF-- |
3 | 5v3jE | 0.18 | 0.13 | 4.25 | 2.18 | HHpred | | ----------------------------------------SQLSH-HQKLHVGEKPYQGKAFPSNAQLHHRVHTDEKCFELRHQRIHTGEKPHKCKDTQLSLHLLTHAGARRFECKSQLALHQMSHTGEKPHKCKECGKGFISDSHLHQSVHTGETPYKCRHQRAHSGDKPYKCKECGKS-----FTCTTELFRHQKVHTGDRPHK-----------CKE-----CGKA- |
4 | 6etxG | 0.11 | 0.11 | 3.93 | 1.30 | MUSTER | | PDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDS |
5 | 4cb8A | 0.14 | 0.03 | 1.19 | 0.55 | CNFpred | | DVSIAVVDLLQELTD---DTLHESEEGAEVLIDALVDGQVVALLVQNLERLDESVKEEADG------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 5v3jE | 0.17 | 0.13 | 4.44 | 0.87 | HHsearch-2 | | FPSNAQLSLHHRVHTDEKCF--ECKEGKAFMRPSHLLRH--------QRIHTGEKPHKGKAFRYDTQLHLLTHAGARRFEALHQMSHTGEKPHKCKDSHLLRHQSVHTGETPYKCKSELARHQRAHSGDKPYKCKECGKSFTCTTELHQKVHTGDRPHKCHHERSHSGEKPYECKECGKT-----FGRGSELSRHQKIHT------------------------------ |
7 | 2tmaA | 0.11 | 0.10 | 3.78 | 2.09 | Neff-PPAS | | --------MQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF |
8 | 5v3jE | 0.17 | 0.14 | 4.60 | 1.66 | HHsearch | | ------PHKCKEC---GKAFH--------TPS--QLSHHQKAQLSLHHR-VHTDEKCKGKAFMRPSHLHQRIHTGEKPHKSLHLLTHAGARRFECKASQLALHQMSHTGEKPHKCKSHLLRHQSVHTGETPYKCKECGKGFRRGSELHQRAHSGDKPYKCRHQKVHTGDRPHKCKECGKA-----FIRRSELTHHERSHSGEKPY-----------ECKECGKTFGRGS- |
9 | 4nl6A | 0.09 | 0.08 | 3.12 | 1.11 | PROSPECTOR2 | | M---------AMSSGGSGGGVPEQEDSKHAL-----------------KNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKSEDGCIYPATIASIDFKRETEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPQNQKEGRCSHSLN |
10 | 5v3jE | 0.19 | 0.11 | 3.51 | 0.93 | SAM | | --------------------------------------------------------------------HQRIHTGEKPHKSLHLLTHAGARRFECKASQLALHQMSHTGEKPHKCKSHLLRHQSVHTGETPYKCKECGKGFRRGSERHQRAHSGDKPYKCRHQKVHTGDRPHKCKECG-----KAFIRRSELTHHERSHSGEKPY------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|