Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | VFLVIVGTAIVTFIPRVLPLMVLSRFQLPEWATRWLSYVPISVMAALVAQEIFKHDEKISFSTNNVELLAAIPTFFIAIKTRSLLVTVLVGIIVVMVLR |
1 | 5wudA2 | 0.11 | 0.10 | 3.69 | 1.25 | SPARKS-K | | --PLLYADAIGLGAFASSGASLAYSVSNN--VILVVIVGAITAVGGGVIRDILSNEVPLREFYATTAVIGSFVYFIASDLSVPEDVALIVSFLITLILR |
2 | 6a2jA3 | 0.07 | 0.06 | 2.56 | 1.36 | SP3 | | LIYSYIVVLLLFVWIIVAAVHAITSYKDQKQIFWGWISCLIFITLQALSGIMIVYSELALGFALAHSFFIACLFGVLCYFL--LLIARFRYES------ |
3 | 2vpyC2 | 0.13 | 0.12 | 4.21 | 1.12 | SPARKS-K | | WNGLMAGLFPLTALVLALGLAALLKSPWA--LFPLRVLAGASLLLALLYPLTLPPEARGHLAGFWY--GLFLLLGLGTFWQERL--APWAGLLAAAGLR |
4 | 6e3yR2 | 0.05 | 0.05 | 2.35 | 0.78 | FFAS-3D | | LTIIGHGLSIASLLISLGIFFYFKSLSCQRITLHKNLFFSFVCNSVVTIIHLTAVANNQALVATNPVSCKVSQFIHLYLMGCNYFWMLCEGIYLHTLI- |
5 | 5da0A | 0.15 | 0.12 | 4.10 | 0.33 | HHpred | | ---STFVAGAFLMVL----I---------LALQPLLVQIPMAALVAVMMVVAISTDWG-SLRFPKGETVVMLATVAVTVFTHDLSLGVLIGVVLSALFF |
6 | 6fv6A | 0.12 | 0.12 | 4.27 | 0.82 | MUSTER | | VEGAGWGIAISEILAFFIYTFLLIFFLEPKLLFKMVRLGTPTALERAITTLSFNVFVGFLAKFGDKVLAAHQIGLRIESISFMIGFGVMIASTTLAGQN |
7 | 5oqtA | 0.16 | 0.15 | 5.04 | 0.87 | CNFpred | | LTMLGIGAIIGTGIFVLTGVAAAEH--GPALVLSFILSGLACVFAALCYAEFAST---VPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVG |
8 | 5da0A | 0.15 | 0.13 | 4.40 | 0.72 | HHsearch-2 | | GRLSTFVAGAFLMVL----I---------LALQPLLVQIPMAALVAVMMVVAISTDWG-SLRFPKGETVVMLATVAVTVFTHDLSLGVLIGVVLSALFF |
9 | 3rlbA | 0.07 | 0.07 | 2.91 | 0.86 | Neff-PPAS | | SLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPK |
10 | 5da0A | 0.15 | 0.13 | 4.39 | 0.79 | HHsearch | | GRLSTFVAGAFLMVL----I---------LALQPLLVQIPMAALVAVMMVVAISTDWG-SLRFPKGETVVMLATVAVTVFTHDLSLGVLIGVVLSALF- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|