Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MKHTGHYLHLAFLMTTVFSLSSGIRTNYTHLGANNTTVWDPDIQNKTGRNQNENSNTNSATPQVDKRSKSTNMPEIAASPHITSFTPKSELELYTPSVARNSAPTLQSIENTSKSHSEIFKKEACEENNNKMAMLVCLIIIAVLFLICTLLFLSTVILANKVSYLRRSKQVGKRQPRSNGDFLASSGLWPAESDTWNRAKQLTGPNLMMQSAGVLTATREKKDEEGTGKLT |
1 | 5yfpA2 | 0.09 | 0.09 | 3.45 | 1.19 | SPARKS-K | | VSRIFQPIVTRLSSYFVELVKAEYLENEIKSLESSNHEFLLSAMYTQIKQVWSDNVEEQVLHFERISNATTNGEILPGILDLPVGLKNSEDLFQFAKRSMDIKDTDEGYESIELMNSSFRSIAATRSITDYMETISLLVNSNWLTFDTSLQNVKKVFDVEKESYASSNIIENRQNLENILLAYTSHEIETLVKRLHTHMVNAINNVLLWSCIQLYLKLYTVIDKHKNDIIS |
2 | 1lxlA | 0.13 | 0.11 | 3.75 | 0.58 | FFAS-3D | | MSQSNRELVVDFLSYKLSQ---------------KGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAA-VKQALREAGDEFELRYRRAFSDLTSQAYQSFEQVVNELFIVAFFSFGGALCVESVDMQVLVSRIAA----------WMATYLNDHLEWIQENGGWDTFVELYGNN------------AAAESRKGQERL- |
3 | 3jacA | 0.14 | 0.13 | 4.26 | 0.41 | HHpred | | ---AFQVVLVVAIHIWMFFILPAVERMFSQNA--VAQLWYSAYQIRCGYPTR--ILGNFLTKLFLFQGFRLELRAVMDTDTTLSLSNWMCVNIFIIKCSREKYPQPKG-----QKKKKI----------VKYGMGGLIILFLIAIIWFPLLFMSLIVVVNQPIELSQQ---FDPYPYSPEDIVSSGALWRISPPSRAQMKQEYGADITLRFT--WNFQRDLAKGGTVE--- |
4 | 3j2k71 | 0.10 | 0.09 | 3.36 | 0.75 | MUSTER | | GAPKKEHVNVVFKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR----KGEFETGFEKGGQTREHAMLAK-VKHLIVLIPTVNWSNERYEECKEKLVPFLKKVGF-NPKKDIHFMPCSGL-QSDFCPW-----YIGLPF-------IPYLDN---PNFNRSVD |
5 | 5yd1A | 0.11 | 0.03 | 1.09 | 0.61 | CNFpred | | ----------------------------------------------------------------------------------------------------------------------------------YFLLGLVYAPVTPMLLPFILVFFALAYVVYRHQIINVYNQ-----------YESAAAFWPDVHGRVITALIIS---------------------------- |
6 | 2kogA | 0.11 | 0.05 | 1.73 | 0.67 | HHsearch-2 | | -------------------------------------MSATAATVPPAAPAGEGGPPAP-PPNLTSNRRLQQTQEVVDRVNVDKVL-ERDQKL--S----ELDDRADAL----QAGASQFETSAAKLKR-KYMIILGVICAIILI-IIIVYFST----------------------------------------------------------------------------- |
7 | 3ld1A1 | 0.06 | 0.06 | 2.43 | 0.97 | Neff-PPAS | | -LRDVILVSKDIPEQLCDALFFYTSHNPKDYADAFAVRQKFDRNLQTGKQFKFETVCGLFLLKGVDKITPGVPAKVLKATSKLADLEDIFGVSPFARKYRELLKTACQWSLT--VETLDARALTLDEIFDPTEILWLQVAAKIQVSAMAMRRLVGEVTAKVMDALSNMSALFQIFKQQIVRIFQAALAIFENVSELPQRIAALKMAFAKCAKSI----------------- |
8 | 2kogA | 0.07 | 0.03 | 1.26 | 0.56 | HHsearch | | -------------------------------------MSATAATVPPAAPAGEGGPPAP-PPNLTSNRRLQIMRV-----NVDKVL-ERDQKL--S----ELDDRADA----LQAGASQFETSAAKLKR-KYWWMMIILGVICAIILIIIIVYFS-----T---------------------------------------------------------------------- |
9 | 5wj5A1 | 0.09 | 0.09 | 3.27 | 0.70 | SP3 | | DGADDTFQAIFHAVDQYLALPDVSLGRY-AYVRGGGDPWTNGSGLALCQRYYHRGHVDPANDTFDIDPMVVTDCIQVDPPERPPPPPSSYKNLTLKTINLQSLINNEIPDNKAHSGETQAHIQECKHPQHGDNSFRLLFDVVVILTCSLSFLLCARSLLRGFLLQNEFVGFMWRQRG--------------RVISLWERLEFVNGSDVLTISGTIMKIGIEAKNLASYDVC |
10 | 4k0mC | 0.08 | 0.07 | 2.69 | 0.98 | PROSPECTOR2 | | KVYTIDEA-------------ARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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