Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | AHLTELMTKYQDSGNNKTDFDIIAAKIKLFEKKKVAYRFKVSEVFNMDKKSVKKVKKIINNNKYILFNSWYTKIRKSNWLNSHDMWNLMKDSLLAKPFVDIFDFMEKLASNTVVSKKHSSVDETSSDGEIKPKKVEFDSDEIKENNERRVKLYEEFYRVLNVTFATDTAPPSSSIYDQKLKNVKGLDRLTRSVVQSGVSAFKHSIKQIETEKSSESATSALVSTDSVASTRKRKQSTHTKKAAKQSKKNEIVLEKQQSVSSFNMVDDAMDYSQLSD |
1 | 5ctqA2 | 0.08 | 0.06 | 2.28 | 0.59 | SPARKS-K | | QVISVTFEKALNAGFATDYVEIWQAYLDYLRRR--------------------------------------VDFKQD-------------SSKELEELRAAFTRALEYLKQ-EVEERFNESGDPS-------------CVIMQNWARIEARLMQKARELWDSIMTRG-NAKYANMWLEAHGDTQHCRKALHRAVQCVCEVLLTMERTEGSL-EDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKRARAEKKAL------------ |
2 | 2p03A | 0.15 | 0.13 | 4.50 | 0.76 | FFAS-3D | | EKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDNSLSGTQEDGLDDPR---LEKLWHKAKTSGKFSGEEL-DKLWREFLHEKVHEYNVLLETLSRT---EEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEPRVIDLWDLAQSTDKELEAFREELFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKH-----ALLEGRTKELGYTVKK--------------------- |
3 | 1adyA4 | 0.12 | 0.05 | 1.67 | 0.26 | HHpred | | --------------NPILDAEAVVLLYECLKELGLRLKVKLSSVGGE---------------------------------------------EARAHLKEVERHLERLSVPYELEPALVRGLDYYHEEAGGGGR----------------------YDGLSELLGGPRVPGVGF--------AFGVERVALALEAEGFG----------------------------------------------------------------------------- |
4 | 5ic8A | 0.09 | 0.08 | 3.14 | 0.61 | MUSTER | | ASQARTFGIFERAVKHPGSIELWLAYLEFAAQVK-----------ATKRRIMTR--RLHPMNASLWTLRRAAQNGDMQ----AHFLRGCRFCREPTLWLEYARCEMDWLARMEAKKILPDPDAEGTDGTKKAAKPVFDAEQTKKLEQSPALSGAIPIAVFDVARKQP--FWGPAAAEKFFDVFAKFGHL-SCHERIISHVVTTMQELFPNHPCTWSVHIRQ----------LVGVDVLTPAFPKALRESLARLKAQSTTDRVAWMDGILAIEKLDA |
5 | 2fgeA | 0.10 | 0.05 | 2.03 | 0.64 | CNFpred | | PLFCQSLLEMGTK----LTFVQLNQLIGRKTG-GISVYPLTSSVRGKDE-----------PCSKIIVRGKSMAGRA---DLFNLMNCLLQEVQDQQRFKQFVQSRARMENRLRG--------------------------SGHGIAAARMDAMLNIAGWMSEQMG-------GLSYLEFLH---TLEKKVDEDWEGISSSLEEIRRSLL------------------------------------------------------------------- |
6 | 2pffB | 0.16 | 0.16 | 5.17 | 0.65 | HHsearch-2 | | QVLNLCLTEFENCYLEGNDIHALAAKLLQENKELIKNYIRIMAKRPFDKKNSALFRAVGEGNVAIFGG------QGNTDDYFEELRDLYQTYHLVGDLIKFSETLSELIRTTLDAEKVFILENTPKTGHSQGLVTAVAIAETDFFVSVRKAITVFFIGVRCYAYP-NTSLP-PSILEDSLENSLSISNLTQEQVQDYV---NKTNSHLPAGKQVEISLVNGAKGPPQLTLRKAKAPSGLDQRIPFSERKFSNRFLPVASPFHNNVSFNAKDIQIPV |
7 | 4hteA | 0.12 | 0.12 | 4.10 | 0.76 | Neff-PPAS | | YKENERLYDLKQKTSLITDDEDRLNKIEDIEDRQKKLE-SINEVFEKDKNYPDQSLNYSDDEKIFITRTILNDRDVLKEAQISLNTVLGNRDISLESIAAASNFFADKLSNILEKNNLSFDDVLENKHEGEDSLKIDYYTNKLEVFRNAENILEDYYDVQIKELFTD--------DEDYKAFNEVTDIKEKQQLIDFKTYHGTENTIELETGNFIPKYSDEDRKYITEQVKLLQEKEFKPNKNQHDKFVFGAIQKKLLSEYDFDYSDNNDLKHLYQ |
8 | 1f13A1 | 0.19 | 0.05 | 1.63 | 0.54 | HHsearch | | DHGQSFYVQIDSRPYDPGKWG---AKIVMREDRSGKFRMYVAVWTPYGV---LRTSRNPETDTYILFNPWCEDDA--VYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 6fmlG | 0.08 | 0.08 | 3.24 | 0.61 | SP3 | | AMYQSLRNQISIMDLDSATVMQFRKVCNLFERADTPFFCGHFAETGSFLREVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGN--LVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDH |
10 | 3tnfB | 0.07 | 0.07 | 2.84 | 0.87 | PROSPECTOR2 | | LDEEQAIKRAQENIKKERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDS-----EKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKKLANLQDMLAVHRKEGKDQQLFNLGGKFYPIHKEQKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNNISK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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