Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MDRNVYEACSNIIKEFGTHVVSADEVLAEKIDNAVPIPFKTREEIDADVEKDRNEGVFEGNIIPDIDLRVVHYYATQLCLNKYPHLINAFDETSLITLGLLIEKWVKDYLTSIQTEQGRQ |
1 | 5guiA | 0.16 | 0.15 | 5.00 | 0.88 | SPARKS-K | | KAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVRVEVEKIIGRGSGFVA--VEIPFTPRAKRVLELSLEEARQLGHNYIG----SEHLLLGLLREGVAARVLENLGADPSNI |
2 | 2a2fX1 | 0.12 | 0.12 | 4.09 | 0.54 | FFAS-3D | | ---NMRDHYNEVLLQR--WVHVFREILDK--EQFLPMVVQNTEEYECIIERFPHSEQLEPKKFPFEVYHQAKEFMYACMKEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPSIT |
3 | 1ku1A2 | 0.11 | 0.07 | 2.39 | 0.24 | HHpred | | -------------------GLRVDEAIRI---------------------------LLTKFRLPGSQERIIEAFSSAYCENQDISTQPDADSVFILSYSIIMEDYSGNLKGCCNDFP--- |
4 | 2f07A | 0.13 | 0.13 | 4.59 | 0.69 | MUSTER | | AEN-LLTHTLDQIKGRLHGDEDFWTVLDILIDETFLITERHKDIIVLCYSGLAIDHSMEKETIYQPYYSWLEKIINKAIANHEVTEGINSKWTARTIINLVENTAERFYIGFEQDENVEV |
5 | 1vgpA | 0.18 | 0.14 | 4.62 | 0.63 | CNFpred | | --SDLYSSIVAGISALGGANYEALKMFKEI-----GSPEKVNDYILNRLSNK--QRIMGFGKTYDPRARILKQYAKLLAEKEGG------EIYTLYQIAEKVEEIGIKYLG--------- |
6 | 1vt4I3 | 0.12 | 0.11 | 3.81 | 0.72 | HHsearch-2 | | -EYALHRSIVDHYNIPSKNIEHPE--RMTLF----RMVFL---DFRFLEQKIRHDSTAWNASGSILNLQQLKFYKPYICDNKIEENLICSKYTDLLALMAEDEAIFEEAHK----QVQRG |
7 | 6db1A | 0.07 | 0.07 | 2.79 | 0.70 | Neff-PPAS | | -DIDRHLVRQTVLSQGNDQYFRFVTRLSRADVKIGGGTPDFAPARQSLENRQKLEEKALSPGPNPDISREVLSNWQALLEKGSLTAWSEHASTVTPALSRAFGASAERFSHEAGALDNTR |
8 | 4yhbA2 | 0.25 | 0.08 | 2.58 | 0.52 | HHsearch | | -------------------------------------------------------------------------------YPEADHYVLLADETALPAAARRIEELPRDASVTAAEEQAP- |
9 | 2l69A | 0.13 | 0.12 | 4.31 | 0.71 | SP3 | | TDEETLRKFKDIIKKNGFTVRSPQELKDSIEELVKKYNADDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVT-S-------PDDFKKSLERLIREVGSLEHHH |
10 | 2np5A | 0.07 | 0.07 | 2.77 | 0.49 | PROSPECTOR2 | | TSAFALRTLVDKLLSEVERGGDPARALFA----ASQLLPLDEARSREAHVAAFAVRAATSPSLAEIRRKTLFTIRTGLSAVLIGIGTPEAETRAALLLATVLEHALDIQIGILQGADVVP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|