Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MYDFLGLRIHFRDDFYTHQSVGDEVHSSVDIVELARRGLRLSAGSVDVSEDGEVSLNDLHHPWDSIPSSYTGIAFKFYQASGFRNLACVEIKASPAKVMQGHNVYGSDRLHTCATYLLESLKRAMPEFCEVLDFNMIDVFRFDSTYSVQLNSRDTLMAALKGLSRVSHKYLRPSRHGQFESTLYFNDAPPEKGKPKTSGRTTSLCIYSKLDEVQFQLDDLKRKAKKERTERYNRVIEELSSHRLKNFANNRLRFEARFKTRWFIKHNIPQNLWDFIAFAEAYEL |
1 | 4cijA | 0.13 | 0.10 | 3.57 | 1.02 | FFAS-3D | | MVDWLQVTFK---------TGQDSVKKCVEKLEKVFEILGLNEAEFLPLKNG-------KYGYKQGVAFQGNPVLAVYYDGADDMGIHVEMTGQGCRLF---ELHTSINWYELFYRLVY--------------EYEVNITRLDVAVDD-FKGYFKINTLVKKLKDDEVTSRFKKGGETIGHTLYFGAPSSD----------IQVRFYEKNVQMDDRAHVVAQIIADDVLPLGEI---------VAGLLRNYIQFRTRKTDKNKKRWPLARFWLNFLGDVQPLRI |
2 | 4cwcA | 0.10 | 0.07 | 2.50 | 1.85 | HHsearch-2 | | SFDAMTIVGNLNKTNAK------------KLSDFMST--EPQ-IR-LWDILQTKFKAK---------ALQEKVYIEYDKVKADWDRRNMRVEFNPNKLTH-------EEM----LWLKQNI---I------DYMEDDGFTRLDLAFDFEDDL----SDYYAMTDKAVKTIFYGR-N-GKPETKYFGV----------RDSDRFIRIYNKKQERKDN-----AD-----------VE---------VMSEHLWRVEIELKRDMVDYWNDSEKVKDIYMLIHEEST |
3 | 4cwcA | 0.10 | 0.07 | 2.59 | 2.27 | HHsearch | | SFDAMTIVGNLNKTNAK------------KLSDFMST--EPQ-IRL-WDILQTKFK----------AALQEKVYIEYDKVKADWDRRNMRVEFNPNKLTH-------EEM----LWLKQNII---------DYMEDDGFTRLDLAFDFEDDL----SDYYAMTDKAVKTIFYGR-N-GKPETKYFGV----------RDSDRFIRIYNKKQERKDN-----AD-----------VE---------VMSEHLWRVEIELKRDMVDYWNDCFNVKDIYMLIHEES- |
4 | 4cwcA | 0.10 | 0.08 | 2.96 | 1.00 | SP3 | | SFDAMTIVGNLNKTNAKK------------LSDFMST-------------EPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSDRRNMRVEFNPNKLT-----------HEEMLWLKQNI-------IDYME--DDGFTRLDLAFDFEDDLSD-----YYAMTDKAVKKTIFYGRNGKPETKYFGVRDSD----------RFIRIYNKKQERKDNADMVDYWSSLEKVKDQAMIYMLIHEESTWGKLERRTK--NKY-REMLKSIS-EIDLTDLMKLTLKENE |
5 | 4cijA | 0.12 | 0.11 | 3.83 | 1.03 | FFAS03 | | CVDWLQVTFK---------TGQDSVKKCVEKLEKVFEILGLNEAEFLPLKNG-------KYGYKQGVAFQGNPVLAVYYDGADDMGIHVEMTGQGCRLFELHTSINWYEL-----------------FYRLVYEYEVNITRLDVAVD-DFKGYFKINTLVKKLKDDEVTSRFKKARHIENIVIEGGETIGHTLYFGAPSSDIQVRFYEKNVQMGMDIDVWNRTEIQLRDDRAHVVAQIIADLPLGEIVAGLLRNYIQFTDKNKKRWPLARFWLNFLGDVQPLRI |
6 | 4cijA | 0.13 | 0.10 | 3.30 | 1.57 | HHsearch-2 | | CVDWLQVTFKTGQDSVKK-C--VE--KLEKVFE--ILGLNEA--EFLPLKNGK---YGYKQGVA-FQGN-PVLAVYYDGA----DDMGIHVEMTGCRLFE--LHT-SINWYEL-------FYR-------LVYEYEVNITRLDVAVDDFKGYF-KINTLVKKLKDDEVTSFKKAHIETIGHTLYFGAP---------SS-DIQVRFYEKNVQMGMD-------------------------------IDVWNRTEIQLRDDRAHVVDDVLPLGEIVAGLLRNYI |
7 | 4cijA | 0.13 | 0.09 | 3.20 | 1.91 | HHsearch | | CVDWLQVTFKTGQDSVKK-C--VE--KLEKVFE--ILGLNEA--EFLPLKNGK---YGYKQGVA-FQGN-PVLAVYYDGA--D--DMGIHVEMTGCRLFE--LHT-SINWYE-------LFYRL-------VYEYEVNITRLDVAVDDFKGYF-KINTLVKKLKDDEVTRFKKAHIETIGHTLYFGAP----------SSDIQVRFYEKNVQMGMD-------------------------------IDVWNRTEIQLRDDRAHVVADVLPLGEIVAGLLRNY- |
8 | 4cijA | 0.11 | 0.08 | 3.05 | 0.81 | SPARKS-K | | CVDWLQVTFK--------TGQDSVKKCVEKLEKVFEILG-LNEAEFLPLKNG-------KYGYKQGVAFQGNPVLAVYYDGADDMGIHVEMTG------------------QGCRLFELHWYELFYRLVYEYE---VNITRLDVAVDDFKGYFK-INTLVKKLKDDHIENIVIEGGETIGHTLYFGAPSSD----------IQVRFYEKNVQAHVVAQIIADD---------VLPLGEIVAGLLRNYI--------QFRTRK-KRWPLARFWLNFLGDVQPLRI |
9 | 4cwcA | 0.12 | 0.10 | 3.33 | 0.98 | FFAS-3D | | -FDAMTIVGNLNKT---------------NAKKLSDF----------MSTEPQIRLWDILQTKFKAKALQEKVYIEYDKKADSWDRRNMRVEFNPNKL-----------THEEMLWLKQNIIDYM---------EDDGFTRLDLAFDFEDDLSDYYA-----MTDKAVKKTIFYGRNGKPETKYFGV----------RDSDRFIRIYNKKQERKDNARDMVDYWSSLEKVKDQAMIYMLTKNKYREMLKSISEIDL---TDLMKL-TLKENEKQLQKQIEFW-- |
10 | 4cijA | 0.14 | 0.10 | 3.39 | 0.62 | HHpred | | CVDWLQVTFKTGQDSVK---KCVE--KLEKVFE--ILGLNEA--EFLPLKNGKYGYKQG---VA-FQGN-PVLAVYYDG-A-DDMGIHVEMTGQGCRLFELHT--S-INWYE----LFY----------RLVYEYEVNITRLDVAVDDFKGY-FKINTLVKKLKDDEVTRFKARGGETIGHTLYFGAP---------SS-DIQVRFYEKNVQMGM-------------------------------DIDVWNRTEIQLRDDRAHVVADVLPLGEIVAGLLR--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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