>PF05098 (462 residues) ERELKYELQCDQKRAYDIYKMVQDDESFEIVESYTDIRDSGNNRTRLMNEANDLNRDLKT IKKKVTEKNVMTYVHEDWIIQMSNTTSLEEPSRIFGEIYDICRVNVYRMTGFCNVEIKFE ETFMNRSKSCYNGIHGNNIIKTLQKLNTMIDDGLVVNMPENNVRIGSDEILLRIRVELEY GYGNPNERDFAEFSEVVKCLLTYLHKDLYYTLHVAHDEMFNKIKYRNFKKTILSTEIDNG SPYEFYAKKLDGTRCKGITLNSSVQTNDNSYEDVQILYILGDDRKFHTFKLDQPLTSQKN VSLGLQLEQINDELFYITDILTMFIVDYNNVTQYNLDYNNKEDIDLRTALTLLPKLRDNN NIRIQRYYKECLFEQNVYNYETQTIPTDGLIAVTSDYELHKIKHVVTYELMYKGQNIFTD RSNKKYKILSDVHCNVNSIYECVVIHDVVTKILKERNDRYFP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ERELKYELQCDQKRAYDIYKMVQDDESFEIVESYTDIRDSGNNRTRLMNEANDLNRDLKTIKKKVTEKNVMTYVHEDWIIQMSNTTSLEEPSRIFGEIYDICRVNVYRMTGFCNVEIKFEETFMNRSKSCYNGIHGNNIIKTLQKLNTMIDDGLVVNMPENNVRIGSDEILLRIRVELEYGYGNPNERDFAEFSEVVKCLLTYLHKDLYYTLHVAHDEMFNKIKYRNFKKTILSTEIDNGSPYEFYAKKLDGTRCKGITLNSSVQTNDNSYEDVQILYILGDDRKFHTFKLDQPLTSQKNVSLGLQLEQINDELFYITDILTMFIVDYNNVTQYNLDYNNKEDIDLRTALTLLPKLRDNNNIRIQRYYKECLFEQNVYNYETQTIPTDGLIAVTSDYELHKIKHVVTYELMYKGQNIFTDRSNKKYKILSDVHCNVNSIYECVVIHDVVTKILKERNDRYFP | |||||||||||||||||||
1 | 4r04A | 0.10 | 0.09 | 3.25 | 1.31 | CNFpred | --DTNIKIKLDKDTRNFIMPTITTNEIR--NKLSYSFDGAGGTYSLLLSS------YPISTNINLSKDDLWIFNID----NEVREISIEN--------GTIKKGKLIKD-VLSKIDINKNKLIIGNQTIDFSGDIDNK-DRYIFLTCELD----------DKISLIIEINL-SYSLLLSGD----KNYLISNLSNTIEKINTLGLDSKNIAYNYTDESN---------NKYFGAISKT--SQKSIIHYKKDSKNILEFYNDSTLEFNSKDFIAEDINVFMKDDINTITGKYYV--DNNTDKSIDFSISLVSKNQVKVNGLYLNESVYS--SYLDFVKNSDGHHNTSNFMNLFLDNISFWINFVIDKYFTLVG-------------TNLGYVEFICDIYFGEWKTSSSKSTIFSGNNVVVEPI-ISTSLDFSYEPLDRYINKVLIAPDLYTSLININTNYYSN | |||||||||||||
2 | 6c0bA | 0.12 | 0.11 | 3.98 | 1.07 | Neff-PPAS | --KLSYSFYGSGGTYALSLSQYNMGINIELSESDVWIIDVDNVVRDVTIESD------KIKKGDLIEGILSTLSIEENKIILNSHEINFSGEVNGSNGFVSLTFSILE-----GINAIIEVDLLSKSYKLLISGELKILMLNSNHIQQKIDYIGFNSELQKNIPYSFVDSEGKENGFINGSTKDDSKPSFGYYSNNLKDVKVITKDNVNILTGYYLKD---------DIKISLSLTLQDEKTIKLNSVHLDESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIISGTTSIGQFEFICDIQPYFIKFNTLETNYTLYVGNLYGIDSCVNKVVISPNIYTDEINITPVYETNNTYPEVIVLDANYINEKINVNINDLSIRYVWSNDGNDFILMSTSEE---NKVSQVKIRFVNVFKDKTLANKLSFNDKQDVPVSEIILSFTP | |||||||||||||
3 | 1ckoA | 0.16 | 0.09 | 2.89 | 1.08 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------NIT-TER--AVLTLNGL------Q--IKLH--KV----VGESRDDIVAKMKDLAMDDHKFPRLPGPNPV----------SIERKDF-EKLK--QNKYVVSEKTDGIRFMMFFTRVF---------GFKVCTIIDRAMTVYLLNIPR--VLFQG--SIFDGELCVDIAFVLFDAVVV-----SGVT---VSQ-MDLA----SRFFAMKRSLDPAILRYKEWIPLEHPTIIKDHKANAIYHTDGLIIMSVDENLFKLKPGHTIDFIIMSEDGIFDPNLRKNPVGDG-YYNKGSIVECGFA-DGTWKYIQGRSDKNQ- | |||||||||||||
4 | 2xidB | 0.08 | 0.07 | 2.73 | 1.11 | PROSPECTOR2 | PQTTSVLIRYAIGDYSKLLETGDNVNSFQAR----VFSSNDIGERIELSDSIAEPITFKVEAGKVYTIGKQIENPNKEIVEPYSVEAYNDFEEFSVLTTQNYAKFYYAKNKNGSSQV----VYCFNADLKSPPD--------------SEDGGKTMTPDFTTGEVKYTHIAGRDLFKYTVKPRDTDPDTFLKHIKKVIEKGYREKGQAIEYSGLTETQLRDSAELDKDKLKDYHGFGDMNDSTLAVAKIL-----------VEYAQDSNPPQLTDLDFFIPNNNKYQSLIGTQWHPEDLVDIIRMEDKKEVIPVTHNLTLRKTVTGLAGDRTK-------------------------DFHFEIELKNNKQELLSQTVKTDKTN------LEFKDGKATINLKHGESLTLQGLPEGLVKETDSEGYKVKVNSQEVANATVSKTGITSDETLAFENNKE---P | |||||||||||||
5 | 4ckbA | 0.12 | 0.10 | 3.43 | 0.90 | SPARKS-K | NNELELVFKPPLITLTNVVN------ISTIQESFIRFTVTNGVKIRTVHGLDVKNIVWEKKSLVTENRLHK-----ECLLRLSTEERHFLDKKYGSSIRELVNLIQAKTKNF-TIDFKLKYFLGSGAQSKS------------SLLHAINHPKSRPN----------------TSLEIEFTPRDPYDELIKELTTLSRHIFMILSPPINAPIK-TFMLPKQDIVGLDLEN-------------LYAVTKTDGIPITIRVTSN------------GLYCYFTHLGYIIRYPVKRIIDSE----VVVFGEAVKDKNW------TVYLIKLIENDR------------LEESKYVESKLVDICRIVFKSYEGPFTTTSESTYLPKQP---EGVILFYSKGPI-DFKIKKTANVVFRMSSEKFSNDKGFPKEYGSGKIVLYVVVPAEFLVNG--EILKPRIDKTMK | |||||||||||||
6 | 4ckbA | 0.14 | 0.11 | 3.77 | 0.92 | FFAS-3D | NNELELVFIKPP--LITLTNVVNIST---IQESFIRVTNKEGVKIRTKIPLSKVHGNIVWEKKSLVTENRL---HKECLL----RLSTEDYKKYGSSIRLELVNLIQAKTKNFTIDFKLKYFLGSGA---------QSKSSLLHAINHPKSR-------------------PNTSLEIEFTPRDPYDELIKELTTLSRHIENVILSPPINAPILPKQDIVG-----------------LDLENLYAVTKTDGIPITIRVTSN------------GLYCYFTHLGYIIRYPVKRII----DSEVVVFGEAVKDKNWTVYLI-----KLIEN--------------DRLEESKYVESKCDRIVFKSKKYEGPFTTTSEVVDMTYLPKQPEGVILFYSKGPDFKIKKENTIDQIFVEYKKFSNDKGFPKEYGSGKIVLYNGVNEYINTHNEVGIILKPRIDK--- | |||||||||||||
7 | 4ckbA | 0.15 | 0.12 | 3.95 | 0.37 | HHpred | ELELVFIK-PPLITL---TNVVNI---STIQESFIRFTVGVKIRTKIPLHGLDAIDNIVWEKKSLVTENRL---H----KECLLRLSTEERIFGSSIRLELVNLIQAKTKN-FTIDFKL--KYFLGSGASKS-----------SLLHAINKSRP------------------NTSLEIEFTPRDNPDELIKELTTLSRHIFM----A-SPENVILSPPINAPIKTFMLPKQDIVGL---DLENLYAVTKTDGIPITIRVTSNG-------------LYCYFTHLGYYPVKRII----DSE--VVVFGEAVKDKNWTVYLIKLIE----N------------DRL--EESKYVESKLVDRIVFKSKKYEGPFTTTSEVVMLSYLPKQPEGVILFYSKGPNIDFKIKKTIDQTANVREPIIFGESSIFVEYKKFSNDKGFIAEFLV----NGEILKPRIDKT-- | |||||||||||||
8 | 4r04A3 | 0.15 | 0.14 | 4.68 | 0.70 | MUSTER | HNSIDDEFNLLENVSDELYELKKLNN---LDEKYLISFEDSTYSVRFINKSNGESVYVETFSKYSEHITKEISTIKNSIITDVNGQLDHTSQVNTLNAAFFIQSLIYSSNKDVSTSVKV-QLYAQLFSTGLNTI--YDSIQLVNLISNAVNDTINVPTITEGIPIVSDNLGAAIK-EL---LDEHDPLLKKELEAKVGVLAIFIAEDINV--------MKDDINT-----TGKYYVDNNTDKSIDFSISLNQVKVNGLYLNESVKNSDGHHNTSNFMNLFLDNISFWKLFGFENINFVIDKYFTLVGKTNLGYVEFICDIDIYFGEWKTSSSKSTIFSGNIYNPDISTSLDFSEPLYGIDRYINKVLIAPDLYTSLINNTNYYSNEYYPEIIVLNPNTFHK---KVNINLDSSSFEYKWSTEGSDFILVRYLEESNKKILQKIRIKGNKMSID---KDKKLS | |||||||||||||
9 | 1ckmA | 0.15 | 0.08 | 2.70 | 1.24 | CNFpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QIKLHKV----VGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIE-----------RKDFEKLKQ--NKYVVSEKTDGIRFMMFFTRV---------FGFKVCTIIDRAMTVYLLP-FKNIPRVQGSIFDGELCVDIKFAFVLFDAVVVS--------GVTVS-----QMDLASRFFAMKRSLDPAILRYKEWIPLEHPTIIKDHLKKAIYHTDGLIIMSVDFNLFKLKPHHTIDFIIMSDGTIGIFDRKNVPVGKDGYYNKGSIVECGFAD-GTWKYIQGRSDKNQA | |||||||||||||
10 | 1ckoA | 0.16 | 0.09 | 2.95 | 0.86 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------------------------------------NITTERAVLTLNG-LQ--IKLHK--V----VGESRDDIVAKMKDLAMDDHKFPRLPGPNP----------VSIERKDF-EKLK--QNKYVVSEKTDGIRFMMFFTRVF---------GFKVCTIIDRAMTVYLLNIPR--VLFQG--SIFDGELCVDIAFVLFDAVVV-----SGVT---VSQ-MDLA----SRFFAMKRSLDPAILRYKEWIPLEHPTIIKDHKANAIYHTDGLIIMSVDENLFKLKPGHTIDFIIMSEDGIFDPNLRKNPVGDG-YYNKGSIVECGFA-DGTWKYIQGRSDKNQA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |