>PF05095 (529 residues) IHLVGNDGMYGHSGGNNISEFLCIADTNTQEPADYQVSTTYINGSWQTETESQLEGMHIS GLRGEPVRVLYNSGSGLTTSGFLDRRNSVSPTHPLCVALLEVLNSFFSHSENASSRHTII FYGDGGAYVQQALDYCRFSNRVDCIGIAPTIYVVGHPSVHHFRVTGDLTTLLDRYGYNHS NVSTLGYSAGAEGLILPGLRDPSYQYVLGIRNLFQLNGGPITDPAVAMSLIQMGSDMRDF TQREAEYNNTDNPHEALVNPHPSTCPDILLSGIFLIPSVVAIMQDVFVRSMLPVEDRNFY WITHIGYTAGLVQRLVLMFTNRREVRFGHRRARLLARSLTAPMLLISAAESINYAQRLQR PVPILQAIYFGGAVMSGTWVVLAIGNTCLTRFRARAQRLGLRLMGEHEQAEDGNGERRVV RVADAARRGVAEALPVMCAGVVAGLGAGILNGCSIPSALNNPINATANNLPENRTWIFDG DILRNPSRSWVSGDWFAVSATVSLILGFIVICVSIGVMVASVRRNQYRR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IHLVGNDGMYGHSGGNNISEFLCIADTNTQEPADYQVSTTYINGSWQTETESQLEGMHISGLRGEPVRVLYNSGSGLTTSGFLDRRNSVSPTHPLCVALLEVLNSFFSHSENASSRHTIIFYGDGGAYVQQALDYCRFSNRVDCIGIAPTIYVVGHPSVHHFRVTGDLTTLLDRYGYNHSNVSTLGYSAGAEGLILPGLRDPSYQYVLGIRNLFQLNGGPITDPAVAMSLIQMGSDMRDFTQREAEYNNTDNPHEALVNPHPSTCPDILLSGIFLIPSVVAIMQDVFVRSMLPVEDRNFYWITHIGYTAGLVQRLVLMFTNRREVRFGHRRARLLARSLTAPMLLISAAESINYAQRLQRPVPILQAIYFGGAVMSGTWVVLAIGNTCLTRFRARAQRLGLRLMGEHEQAEDGNGERRVVRVADAARRGVAEALPVMCAGVVAGLGAGILNGCSIPSALNNPINATANNLPENRTWIFDGDILRNPSRSWVSGDWFAVSATVSLILGFIVICVSIGVMVASVRRNQYRR | |||||||||||||||||||
1 | 4he8F | 0.09 | 0.06 | 2.28 | 1.08 | CNFpred | ----------------------------------------------------------------------------------------------VLASFLLGAGLLLSGGAR-GIPFSLLLDNLSGFMLLIVTGVG------FLIHVYAIGYMGGDPGYSRFF---AYFNLFIAMMLT-------------------LVLADSYPVMFIGWEGVGLA---------SFLLIGFWYNPQYADSARKAFIVN-------------IGDLGFMLGMAILWALYGTLSISELKEAM-LLALAGLLLFLGAVGKSAQIPLMVWLPDAMAG--PTPVSALIHAATMVTAGVYLIARSSFLYSVL---PDVSYAIAVVGTAAYGALSAFGQTDIKKIVAYSTISQLGYMFLA--------------AGVGAYWVALFHVFTHAFFKALLFLASGSVIHAL--------------------GEQDVR--KMGGLWKHLPQTRWHALIGALALGGLLLSGFWSKDAILAATLTYPFGG | |||||||||||||
2 | 5xn7A | 0.09 | 0.08 | 2.91 | 1.24 | PROSPECTOR2 | NLLVQEG--------FEVRSTILLDNPQQKSDNFEQPDELFLVDN------------KVLSHHDGRTRILARKANVELSVTELLAHVSGKVRGESYQQVIDALTEYHASTAEHA--------DYELTSVEKLLNRVQANALLNQVNSRLEAVSVLVVSEQSIKAHDSFSHLYDQLDNANLKESKHLYLDGNGDFVTKG--KGNLANI-----------DKLGGSDAVLEKVKAAVSHEYGQVVADTIFAGLSANDL-AKDGKGIDIAGLNKVHQAIEQGQAAADFNKQNYVSWWPLGSKSSNIRNIFNDLKLRWSDFSQPAHQGLNDGETKLKRFVEKLNASEGYASVLLGNPDLASTGIPAHVFQPFVDQWNDTSYDDVANRFAE----ELQKQAQA-----------------------SGDPALVEKRIDNVVRLFAERALEEIEAFKASQADEGRVFRINLEGLDVAAQAEWNRLSNDPDARYQLLTKNASSTVAKVLKAADKLIELFNFGQALQEAQLEIAAKK | |||||||||||||
3 | 5a22A | 0.08 | 0.07 | 2.81 | 0.72 | SPARKS-K | EKGKYRSHYSQLWLFSDVLSILYKPFLSGK--------------DKNELRELANLSSLLRRESRGTITTIPVYYTTTPYPKMLEMPPRI--QNPLLSGIHYKIRSILHGMGIHYR--DFLSCGDGGGMTAALLRENV---HSRGIFNS---LLELSGSVMRGASPEPPSALETLG----GDKSRCVNGETCWEYPSDLCDPRTWDYFLRLKAGLGL--------QIDLIVMDMVRDSSTSLKIETNVRNHRI-------LDEQGVLIYKTY-------GTYICEEKNAVTIL-GPMFKTVDLVQTEFSSSQTSEVYMVC--KP----DWSSINESWKNLYAFQSSEQEFARAKKVSTIPDPFVNIETMLQIFPTGVSHAAALKSSDDLLTISLFYMAIISYYNINHIRVGPIPPN---PPSDGIAQNVGIAITGISFWLSLMEQQCLAVIQQSFPI-------RWEAVSVKGGYKQKWSTRGDGLPKDTRISDSLAPIGNWIRSLELVRNQVFNEILFNQLCRTVDNHL | |||||||||||||
4 | 3aqpA | 0.11 | 0.08 | 2.79 | 0.91 | FFAS-3D | ----------------------------------------------------EEPKVRLGDLKG-GLRIVLEA-------------DVENPTLDDLEKARTVLENRINALGQGQKRIVVELPGLSQADQDRALKLIGQRAVLE--------FRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLG-------------------PPLLTGADLADARAVFDQVSLTFTPEGAKKFEEVTRQNIGKTAPVIRQAITGGQAVIEGLSSEASEIALVLRSGSLPVPLKVAQDAIQAGIRSALIGTLAIFLLIFA--------YYGPHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNVLSFERIK---------------------EELRAGKKLRQAI---PEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRG-------------------------------------FAVILAIGVVASVFSNLVFSRHLLERLADRGEIR | |||||||||||||
5 | 5j8jA | 0.14 | 0.05 | 1.81 | 0.43 | HHpred | -PLVSMLPDNTVLCTPNISEVVHDTSKRNVISGTIDLSSSVIIDNSLDFIKWGLD-------RKYGI-IDVNIPLTLF-----E-PDNYSGMITSQEVLIYLWDNYIKYFPS-VAKIAFIGIGDSYSGIVHLLGHRDTRAVTKVINFLGDKQLKPL-------VPLVDE---TLSEWYFKNS--LIFSNNSHQCWK----KP----RKKFG--RVLRC--DTDGLN-------NIIEERFEEATDFILDS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 1b3uA | 0.11 | 0.10 | 3.71 | 0.72 | MUSTER | IDELRNEDVQL----LNSIKKLSIALALGVERTRSEL-LPFLTDTIYDEDEVLLALAEQLGTFTTLV------GGPEYVHCLLPESLATVEETVVRDKAVESLRAISHEHSPSDLEAH------FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA-ELRQYFRNLCSTPMVRRAAASKL-------GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVNIAQLLPQALVMPTLRQAAEDKSWRVRYMKAVGPEITKTDLVPAFQNLMK-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSNQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEWRVRLAIIEYMPLGQLGVEFFDEKLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHSEVCGQDITTKHMLPTVLRMAGDPVAFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ | |||||||||||||
7 | 3zgeA | 0.09 | 0.06 | 2.31 | 1.05 | CNFpred | ----------------------------------------------------------------------------------------------EVKDCLDTFKVLAELP---CFGAYIISMATSTSDVLAVELLQRIKHPLRVVPLFEKLADL-------EAAPAAMTRLFSMDWYRGKQEVMIGYSDSG-----KDAGRFSAAWQLYKTQEQIVKIAKE---GVKLVIFHGR-GGGPTHLALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMA-RFVEYFRLATPELEFGR-LRAIPWIFSWTQTRFHLPVWLGFGAAFKHAIKNLQMLQEMYKTWPFFRVTIDLVEMVFAKNPGIAALNDKLLVSED--------------------------LRPFGESLRANYEETKNYLLKIAGHKDLLEG-------------------------------DPYLKQGIRLRDPYITTLNVCQAYTLKRIRDPNYHVT | |||||||||||||
8 | 2pffB | 0.13 | 0.11 | 3.72 | 0.98 | HHsearch-2 | ---MDAYSTR------P--LTLSHG-------------------SLEHVLLVPTASFFISQLQEQFNKILPEPTEGF-----------AADDEPTTPAEL--VGKFLGYVSSL-----VEPSKVGQFDQVLNLCLTEFEN----------CYLEG----------NDIHAL--AAKLLQENDTTLVKTKE------------LIKNYITARKRPFDNAAVGEGNAQLVAIFGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAVFTQGLNILEWLENPSNTPDKDYLLSIPISIGVIQLAHYVVTAKLFTPGLRSYLGLVTAVAIAFVSKAITVLFFIGVRCYEAYPLPPSILEDSLGVSPML-------SISNLTQEQVQDYV-NKTNSHLPAGKQEISL-----VNGAKNL----VVSGPPQSLYGLNLTLRKAKLDQSRIPFS-ERKLKFSNRFLPVKNNVSFNAKDIQ--IPVYDTFRVLSGSISERIVDCIIRLPVKWETTTQLTHRNKDGT | |||||||||||||
9 | 1b3uA | 0.09 | 0.08 | 3.10 | 0.90 | Neff-PPAS | --TFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGWFTSRTSACGLFSVCY------PRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE----QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS------WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV-------IMGLSPILGKDNTIEHLLPLFLAPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWLAIIEYMPLLAGQLGVEFFDEKLNSLCMYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV------------------------ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ | |||||||||||||
10 | 5j8jA | 0.14 | 0.05 | 1.81 | 0.59 | HHsearch | LPLVSMLPDNTVLCTPNISEVVHDTSKRNVISGTIDLSSSVIIDNSLDFIKWGLD-------RKYGI-IDVNIPLTLF-----E-PDNYSGMITSQEVLIYLWDNYIKYFPS-VAKIAFIGIGDSYSGIVHLLGHRDTRAVTKVINFLGDKQLKPL-------VPLVDE---TLSEWYFKNS--LIFSNNSHQCWK----KP----RKKFG--RVLRC--DTDGLN-------NIIEERFEEATDFILDS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |