Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | EKPEHLVVMVNGIIGSSADWKYAAEQFVNKFPDKVLVHRSESNCATLTFDGVDMMGQRLANEVLSVIKHRSGLKKISFVAHSLGGLVARYAIGKLYQQPNSLDSPSKAKGGEIAGLEPINFITFATPHLGVRGHRQFPILCGLPFLERTASQTAHLAAGRTGKHLFLVDNDDGNPPLLIRMATDSGDLKFISALHAFKRRVAYANVNFDYMVGWRT |
1 | 5h3hA | 0.11 | 0.10 | 3.65 | 1.13 | SPARKS-K | | IGSGQPVVMLHGWPANNNMFEYQKNRLLEEG-YRYIGVDYRGYGKSDAPATGYDY-TTMASDINEVIQQLK-LTNVTLLGFSMGGGIALKYLLNHGES------------------NVSKLILAGAAAPVFTQRDGYPYGMTKDEVDALIEDTRPSMLKGFGEIFFAKEHPEPLQQWFHNLSVDASSHQSAIALRDITVDTLIMHGKKDQVCPFEF |
2 | 1pjaA | 0.15 | 0.13 | 4.38 | 1.33 | FFAS-3D | | --SYKPVIVVHGLFDSSYSFRHLLEYINETHPGT-VVTVLDLFDGRESLRPLWEQVQGFREAVVPIMAKAP--QGVHLICYSQGGLVCRALLSVMDDHN------------------VDSFISLSSPQMGQYGDKWLFPTSMRSNLYRICQEFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITP--- |
3 | 5h6bA | 0.24 | 0.19 | 5.93 | 1.31 | HHpred | | PSAPRPVVLVHGTFGNSDNWLVLAPYLVNR-GYCVFSLDYGQLPGFHGLGPIDKSAEQLDVFVDKVLDAT-GAPKADLVGHSQGGMMPNYYLKFLGGAD------------KVNA-----LVGIAPDNHGTTLLG-------L---TKLLP-----FFPGVE--KFI-S---DNTPGLADQVA---GSPFITKLTATVPGVRYTVIKYDQVVPYRT |
4 | 1pjaA | 0.14 | 0.12 | 4.13 | 1.07 | MUSTER | | --SYKPVIVVHGLFDSSYSFRHLLEYINETHPGVVTVL--DLFDGRESLRPLWEQVQGFREAVVPIMAKAPQ--GVHLICYSQGGLVCRALLSVMDDHN------------------VDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYPWGQEFSICNYWHDPHHNASSFLALINGERDHPVWRKNFLRVGHLVLIGG-PDDGVITPWQ |
5 | 3t4uA | 0.12 | 0.11 | 3.90 | 1.27 | CNFpred | | WGSGKPVLFSHGWILDADMWEYQMEYLSSR-GYRTIAFDRRGFGRSDQPWT-GNDYDTFADDIAQLIEHL-DLKEVTLVGFSMGGGDVARYIARHGSA------------------RVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARFKTELRAQFISDFNAPFYGINKGQ-SLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFET |
6 | 1zd4A | 0.15 | 0.13 | 4.51 | 0.43 | HHsearch-2 | | LGSGPAVCLCHGFPESWYSWRYQIPALAQA-GYRVLAMDMKGYGESSAPPEEEYCMEVLCKEMVTFLDKL-GLSQAVFIGHDWGGMLV-WYMALFYPER-------------VRAV-----ASLNTPFIPANPNMANPVYFQEPGAEAELEQN----LSRTFKSLFRASDEEEIQFYVQQFKKSGFRGNWYSLGRKILIPALMVTAEKDFVLVPQM |
7 | 1pjaA | 0.14 | 0.12 | 4.14 | 1.24 | Neff-PPAS | | --SYKPVIVVHGLFDSSYSFRHLLEYINETHPG-TVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMAKAP--QGVHLICYSQGGLVCRALLSVMDD------------------HNVDSFISLSSPQMGQLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGG-PDDGVITPWQ |
8 | 5a62A | 0.13 | 0.12 | 4.00 | 0.67 | HHsearch | | DARSYPLVLIHPIGGNILIWDYEIQLLLKS-GFRVIAYELRGHHRTNMGKTGAYTMQDLIDDLRRLLEHL-NIGKCTIIGHSIGGIIS-SMYAAQHPGK-------------VDAI-----IMINGSPKKFQEKDLEKHF---RTREVAITQGMKALAEHKLVSLDEARDLFADKDFFREVFTYTIPGNVVQGLRASGCKVFAIVGSDDVFMR-L- |
9 | 1zoiA | 0.14 | 0.12 | 4.26 | 1.36 | PROSPECTOR2 | | PRDAPVIHFHHGWPLSADDWDAQLLFFLA-HGYRVVAHDRGRSSQVWDGHDMDHYADDVAAVVAHL-----GIQGAVHVGHSTGGGEVVRYMARHPEDKVAK------------------AVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVRAQFYRDVPAGPFYGYNRPGVEKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQIVPYES |
10 | 1cvlA | 0.17 | 0.15 | 4.87 | 1.47 | SAM | | -ATRYPVILVHGLAGTVDYWYGIQSDLQSH-GAKVYVANLSGFQSDDGP---NGRGEQLLAYVKQVLAAT-GATKVNLIGHSQGGLTSRYVAAV--------------APQLVASV-----TTIGTPHRGSEFADFVQDVLKSTVIAAFVNVFGTLVSSQDALAALRTLTTAQTA-TYNRNFPSGSQHLLYSWGGTAIQPTSTVTGATDTSTG--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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