>PF05055 (312 residues) LKSFDSTQRDRTTRVIKSVAADVQVRSLSLDSLRQVIGSLHDMNQDVVKFLLECEEDISK SHELSSLVKDFFRLSILILDFCISLENCLKNASYSSSFLQIAIKQFDEDNDHLKTLEHFK QFKALEAPFPVEFFRKYESVCEQQQSMQKKLEKQTGKVAKKLKSAKVWRKLTNVIFVVTF SAVLICTVVTAAVSAPAVVIALAAAAAAAVGPMGKWVDSLWKEYETELKGQRKVMISMDT GNDVVIAELKNIKALVDKFGNEREDLLQKAEFAIKEEEKDAEAVAVADAVAAAVNEMRRI MSDFEKTIADLS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LKSFDSTQRDRTTRVIKSVAADVQVRSLSLDSLRQVIGSLHDMNQDVVKFLLECEEDISKSHELSSLVKDFFRLSILILDFCISLENCLKNASYSSSFLQIAIKQFDEDNDHLKTLEHFKQFKALEAPFPVEFFRKYESVCEQQQSMQKKLEKQTGKVAKKLKSAKVWRKLTNVIFVVTFSAVLICTVVTAAVSAPAVVIALAAAAAAAVGPMGKWVDSLWKEYETELKGQRKVMISMDTGNDVVIAELKNIKALVDKFGNEREDLLQKAEFAIKEEEKDAEAVAVADAVAAAVNEMRRIMSDFEKTIADLS | |||||||||||||||||||
1 | 5j1iA | 0.12 | 0.11 | 3.88 | 1.04 | SPARKS-K | LKDIRLQLEACETRTVHRLRLPLDKEP--ARECAQRIAEQQKAQAEVEGLGKGVARLSAEAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRAEATKASLKKLRAQAEAQ-----QPTFDALRDELRGAQEVGERLQQRHERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMDS------QAVREQLRQEQALLEEIERHG----EKVEECQRFAKQYINAIKDYELQLVTYKAQLEGSESVIQEYVDLRTHYSELTTLTSQYIKFISET- | |||||||||||||
2 | 5j1iA | 0.11 | 0.11 | 3.81 | 1.58 | FFAS-3D | LKDIRLQLEACETRTVHRLRLPLDKE--PARECAQRIAEQQKAQAEVVARLSAEAEKVLALPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGA----------EEVLRAHEEQLKEAQAVPAT-LPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERLWRERVAQLLVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMDSQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQQSGSESVIQEYVDLRTHYSELTTLTSQYIKFISE-- | |||||||||||||
3 | 5j1iA | 0.10 | 0.10 | 3.67 | 1.32 | Neff-PPAS | LKDIRLQLEACETRTVHRLRLPLDKE--PARECAQRIAEQQKAQARLSAEAEKVLALSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRALPELEATKASLKKLRAQAEAQ-QPTFDALRDELRGAQEVGERLQQRHERDVEVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMDSQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEGSESVIQEYVDLRTHYSELTTLTSQYIKFISET- | |||||||||||||
4 | 2pffB | 0.11 | 0.10 | 3.51 | 1.22 | HHsearch | HGSLASQLQEQFNKILPEPTEGADDEPTTPELVGKFLGYVSQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM------AKRPFDKKNLFRAVGEGNAQFGGQTDDYFEELRDLYQTYHVLVGDLI---KFSAETLSELIRTTLPDKDYLPISCPLIGVIQLAHYVVTAKLLFTPGELRLATGHSQGLAETDSWESFF-VSVRKAIT-VLFFIGVRCYEAYPNTSLPP------SILEDSLENNEGVPSPMLSIS--N--------LTQEQVQDYVNKTNSHLPAGKQV- | |||||||||||||
5 | 6gy6B | 0.07 | 0.07 | 2.87 | 1.16 | PROSPECTOR2 | YPEINKAMNQAVNTIWLLAQRQTSGIEIINDKVKRISAYSREFDEMMRDSLAQLAPKQLTSDAAFQTIAQIDEAKDDREALTLERNNLIQNLSKHIDNVIVSFT---------GRTSKLTNKISSDMVIAERLQDLVTQTESQKTELQSDIDPKTEKRNKLDADREKIIESQDVIRQNNIADMFQAIKQGAEIARKILGKVSEGLKYIDLADARMKLSDQIDQLITETDELKAKIREVEL-RLSGLKDVMQIDTERTTLLTEAVKIEQVWISFAEQLHKLSNDEINQQDLSNLINGQLDFLNNLTLQYNKLK | |||||||||||||
6 | 5k7vA | 0.09 | 0.07 | 2.81 | 1.00 | SPARKS-K | IDILAESSKKSIEELARAADNKTT-----EKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIAELAKKAIEAIYRLARAIAAIANLAVTAILAIAALASNHTTE-----------------EFMARAISAIAELAKKAIEAIYRLADNH----TTDKFMAAAIEAIALLATLAILAIALLA------------------TEEFMAKAISAIAELAKKAIEAIYRLADN-HTSPTYIEKAIEAIEKIARKAIKAIEMLAKNI-----------TTEEYKEKAKSAIDEIREKAKEAIKRLEDNR | |||||||||||||
7 | 1u4qA | 0.10 | 0.09 | 3.43 | 1.54 | FFAS-3D | QQNFNTGIKD-FDFWLSEVEALLASEDYDLASVNNLLKKHISAHEDRLKDLNSQADSLMTSSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDM-------DDEESWIKEKKLLVSSEDYGRD--LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFV------------ANVEEEEAWINEKMTLVASELAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE-- | |||||||||||||
8 | 6ek4A | 0.09 | 0.09 | 3.33 | 1.24 | Neff-PPAS | -KSGIEIIQEKTLRISLYSRDLDEAARASVPQLQTVLRQLPPYFLTLTEIDTELEDPELDDETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYLADMFKDYIPNISDLDKLDLANPKKELIKQAIKQGVEIAKKILGNKGLKYIELADARAKLDERINQINKDCDDLKIQLKGVEQ-RIAGIEDVHQIDKERTTLLLQAAKLEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLALQYHSML | |||||||||||||
9 | 6ek4A | 0.08 | 0.08 | 3.12 | 1.16 | PROSPECTOR2 | VVEINVKTLSQAVKNIWRLSHQQKSGIEIIEKTLRISLYSRDLDEAARASVPQLQTVLLPPQDYFLTLTEIDTERNTLLEARSEHIRNLKDVKGVIRSLRKEAN------LMASRIADVS-----NVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYNLADMFNISDLDKLDLANPKKELIKQAIKQGVEIAKKILDERINQINKDCDDLKIQLKGVEQ-RIAGIEDVHQIDKERTTLLLQAAKLEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLALQYHSMS | |||||||||||||
10 | 2tmaA | 0.08 | 0.07 | 2.87 | 1.51 | FFAS-3D | MDAIKKKMQLDKENALDRAEQ-------AEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA----------------------------EERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE---FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |