>PF05004 (310 residues) EYDTAEETASVTSSHISEPDSIEEAIASHGLDDVDETSGQDAFEEKIRDFIDGTTQKSAA GRKHCFEGIRAAFSKKYIFDFVDSRKITIADCLERSIKKGKGDEQVLAAKLLNTLWIQLG AGPECEEVFAALRPVLMSKVLDKTASPAARASCASALGLGTFIAAAEFETVCSCMNALED IFSASYLKGDGSSPTHKPGVSTLHTAALNGWMLLLSITPTSRIKHIVETHLPKLPDLLSS DDVNLRIVAGEAIAMLYELAREDDEEFEGDDIDELVVKIRNLATDSNKHRAKKDLRQQRS SFRDIIQTIE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EYDTAEETASVTSSHISEPDSIEEAIASHGLDDVDETSGQDAFEEKIRDFIDGTTQKSAAGRKHCFEGIRAAFSKKYIFDFVDSRKITIADCLERSIKKGKGDEQVLAAKLLNTLWIQLGAGPECEEVFAALRPVLMSKVLDKTASPAARASCASALGLGTFIAAAEFETVCSCMNALEDIFSASYLKGDGSSPTHKPGVSTLHTAALNGWMLLLSITPTSRIKHIVETHLPKLPDLLSSDDVNLRIVAGEAIAMLYELAREDDEEFEGDDIDELVVKIRNLATDSNKHRAKKDLRQQRSSFRDIIQTIE | |||||||||||||||||||
1 | 6cokA | 0.07 | 0.06 | 2.37 | 1.04 | SPARKS-K | -------------STLFDEYEFQLLLAEA-----KLYESLNQLQQDLENLLAPFQSVKEKLRQSNIIELDNIISGNINPEEFVTVIKELIELISRATSSLRTTLSLTALLFLKRLIHILNDQLP-LSILDQIFVIFKNLLSST--KKISSQTAFHCLITLIIDINHFHN---KLFQLSFLLINE--------------KTVTPRFCSAILLRSFLIKFN-DSNLSNIIYIEEWLKKGISDSQTTVREAMRLTFWYFYKCYP---------------TNAKRLLSSS---FSPQLKKATELAIPAHL---- | |||||||||||||
2 | 1qgkA3 | 0.13 | 0.10 | 3.61 | 1.51 | FFAS-3D | --------------------------------------QHQDALQISDVVMASLTAGSGGVQEDALMAVSTLVEV--LGGEFLKYMEAFKPFLGIGLKNYAYQVCLAAVGLVGDLCRALQ--SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKLEVVLNTLQQASQA---QVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGMLVQPRVEFILSFIDHIAGDEDDGVVACAAGLIGDLCTAF-----------GKDVLKMIHELLTEGRRSKTNKAKTLARWATKELRKLKN | |||||||||||||
3 | 3ea5B2 | 0.11 | 0.09 | 3.25 | 0.99 | HHpred | ---------------------------------------EPVADMLMGLFFRLLEKDSAFIEDDVFYAISALAASLG--KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFPYLNDIMALCVAA-QNTK----------PENGTKVLEAVLDAYVGIVAGLHDKALFPYVGTIFQFIAQVAEDPEDATSRAAVGLIGDIAAMFPDGS--IKFYGQDWVIDYIKRTR-SGQ-LFSQATKDTARWAREQQKRQLS | |||||||||||||
4 | 3w3tA | 0.14 | 0.13 | 4.31 | 1.13 | MUSTER | SIDDDDAAEWIESDDTDDEEEVTYDHARQALDRVALKLGGEYLAAPLFQYLQQMISTEWRERFAAMMALSSAAE--GCADVLIGEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTDFSP-FIQRTAHDRILPALISKLTS-ECTSRVQTHAAAALVNFSEFASKDEPYLDSLLTNLLVLLQS--------------NKLYVQEQALTTIAFIAEAA-KNKFIKYYDTLMPLLLNVLKVN-SVLKGKCMECATLIGFAVGK---EKFHEHSQELISILVALQNS-----DDALRSYLEQSWSRICRILG | |||||||||||||
5 | 5vchA | 0.13 | 0.12 | 4.04 | 1.21 | CNFpred | SSSNPFERRSILLAISVLVTGSPDYTLS-------------QFDKIIPATVTGLKDSEAVVQLAALKCIVQLSTN--LQDEVARYHEQYLPLVIDIIDSAHVVIYKYATLALDGLLEFI-AHNDIIKYLDPLMNKLFQMLETQ-QSPKLRAAIVSAIGSCAFAAGSGVPYFKTSVQYLQQFIQNVS-----QIEGLSEDDIELKALTFENISTMGRAVKSAAFAEYAEPLVNAAYEAIKTDSARLRESGYAFIANMAKVYGKD----FAPFLQTIIPEIFKTLEQE-----NTGIAYEKEVAAAALSELA | |||||||||||||
6 | 3ea5B2 | 0.11 | 0.09 | 3.25 | 0.51 | HHsearch-2 | --------------------------------------VEPVADMLMGLFFRLLEKDSAFIEDDVFYAISALAASLG--KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFPYLNDIMALCVAA-QNTK----------PENGTKVLEAVLDAYVGIVAGLHDKALFPYVGTIFQFIAQVAEDPEDATSRAAVGLIGDIAAMFPDGS--IKFYGQDWVIDYIKRTR-SGQ-LFSQATKDTARWAREQQKRQLS | |||||||||||||
7 | 4plqA | 0.11 | 0.10 | 3.69 | 1.37 | Neff-PPAS | PGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIAS--GGNEQIQAVIDAALPALVQLLSSPNEQILQEALWTLGNIAS-GGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWTLGNIASGGNEQIQAVIDALPALVQLLSS--------------PNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQKQAVKEAG---AEPALEQLQSS--------PNEKIQKEAQEALEKIQ | |||||||||||||
8 | 2qk2A | 0.15 | 0.11 | 3.70 | 0.82 | HHsearch | -----------------GS---HDL---------LDPV--DILSK-PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE--NGEYGALVSALKKVITDSNVVLVA-AGKCLALLAKGLAKR--FSNYASACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS-----LEAQQESIVESLSN--------------KNPSVKSETALFIARALTRTQPTALNKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL-GDKTADVDPLK-AKIKECQEK----AEI-KIKVA---------------- | |||||||||||||
9 | 2bkuB2 | 0.11 | 0.11 | 3.85 | 1.24 | PROSPECTOR2 | TDTVADKLGQTMSVDENQLTLEDAQSLQELQSRKSPSSVEPVADMLMGLFFRLLEKDSAFIEDDVFYAISALAAS--LGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHPEALFPYVGTIFQFIAQVAEDSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQ-DWVIDYIKRT--RSGQLFSQATKDTARWAREQQKRQLS | |||||||||||||
10 | 2qk2A | 0.16 | 0.10 | 3.41 | 0.73 | SAM | -------------------------------------DPVDILSK-PKDFYDKLEEKKWTLRKESLEVLEKLLTDHP--KLENGEYGALVSALKKVITDSNVVLVA-AGKCLALLAKGLAKRF--SNYASACVPSLLEKFKEK--KPNVVTALREAIDAIYAS-----TSLEAQQESIVESLSN--------------KNPSVKSETALFIARALTRTQPTALNKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK---------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |