>PF04924 (370 residues) MDKLKVLYEDFYRISRLYLEKETQSTTLAPDFDVDVSIFMNLVPVLEQKVVPVNADISDD DVLRMMKYCNYKLFSFWFLKSNAVVKSVYNKLETEDEQRTFTKLFKDILTNVQTLISINN MYNNIKQDTADIVSDSKKIIDIVHQIRNANCESSAYKLLQTNYNFIVKTINKILSDENYL LKIIAVFDSKLVTDKDKLTEYREIFTISTESIIHGIRCISELDIPTIEVENNKYIAFFKK ILGTVILFQNNDLNSQKFIQAVSKLYVLIYQQFKTNPEVAYLLTDVLDSVKTKVSIDEIK QKGINNLQSLIKFISDNKTSYKAILSDEYTKRENSIIDILQSISEENRIEHGGNVINIRY LIDITKNRFF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDKLKVLYEDFYRISRLYLEKETQSTTLAPDFDVDVSIFMNLVPVLEQKVVPVNADISDDDVLRMMKYCNYKLFSFWFLKSNAVVKSVYNKLETEDEQRTFTKLFKDILTNVQTLISINNMYNNIKQDTADIVSDSKKIIDIVHQIRNANCESSAYKLLQTNYNFIVKTINKILSDENYLLKIIAVFDSKLVTDKDKLTEYREIFTISTESIIHGIRCISELDIPTIEVENNKYIAFFKKILGTVILFQNNDLNSQKFIQAVSKLYVLIYQQFKTNPEVAYLLTDVLDSVKTKVSIDEIKQKGINNLQSLIKFISDNKTSYKAILSDEYTKRENSIIDILQSISEENRIEHGGNVINIRYLIDITKNRFF | |||||||||||||||||||
1 | 6br8A | 0.42 | 0.27 | 8.02 | 1.77 | SPARKS-K | -----------------------------------------------------------------------------------------------------------------------------KKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILE-NNSFIIRTINKVLADSNYIIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFKKVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTNERLHVLFSEI-ASFKTKVSVEDLKKRKVNNIQGLISEISNNRE-YKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIEFIFDFIQEHYI | |||||||||||||
2 | 6br8A | 0.42 | 0.27 | 8.02 | 3.29 | FFAS-3D | -----------------------------------------------------------------------------------------------------------------------------KKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILE-NNSFIIRTINKVLADSNYIIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFKKVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTNERLHVLFSEI-ASFKTKVSVEDLKKRKVNNIQGLISEISNNRE-YKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIEFIFDFIQEHYI | |||||||||||||
3 | 6cb6A | 0.50 | 0.15 | 4.39 | 1.78 | FFAS-3D | --KLRVLYDEFVTISKDNLERETGLSASDVD--DFDLNIFTLVPVLAAAVCAITPTIEDDKIV--TKYCSYQSFSFWFLKSGAVVKSVYNKLD-YVKKEKFVATFRDLL-NVQTLISLNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 6br8A | 0.41 | 0.27 | 7.95 | 10.09 | HHpred | -----------------------------------------------------------------------------------------------------------------------------KKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILEN-NSFIIRTINKVLADSNYIIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFKKVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTNERLHVLFSEI-ASFKTKVSVEDLKKRKVNNIQGLISEISNNRE-YKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIEFIFDFIQEHYI | |||||||||||||
5 | 6cb6A | 0.53 | 0.16 | 4.61 | 5.19 | HHpred | --KLRVLYDEFVTISKDNLERETGLSASDVD-DFDLNIF-TLVPVLAAAVCAITPTIEDDKIV--TKYCSYQSFSFWFLKSGAVVKSVYNKLDY-VKKEKFVATFRDL-LNVQTLISLNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6br8A | 0.42 | 0.28 | 8.10 | 1.77 | MUSTER | -----------------------------------------------------------------------------------------------------------------------------KKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILE-NNSFIIRTINKVLADSNYIIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFKKVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTN-ERLHVLFSEIASFKTKVSVEDLKKRKVNNIQGLISEISNNRE-YKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIEFIFDFIQEHYI | |||||||||||||
7 | 4fgvA | 0.10 | 0.09 | 3.30 | 1.07 | CNFpred | EPFIEEIIRNIGKITCDL------------TPQQVHTFYEACGYMVSAQ--------NRNQQERLLAELMAIPNAAWDEIIKAATMNP-GILHEPDTIKIIGNIMKTNVSACSSIGYFFPQIGRLYNDMLQMYAATSQLISEAVARDGEATKMPKVRGLRTIKKEILKLVETFVEKAEDLQAVRSQMIPGLL--DSVLVDYNRNVPGADAEVLKAMTVIITRLQGLMED---QVPAIMENVFECTLDMINKD-HRVEFFNLLRAINLYCFPALLDNRQFKFVIDSCMWASKH---NRDVETAGLNMCLELINNIATDVQTCNAFFNQFFIRILQDVFFVLTDT---------DHKAGFKTQSMLLMRLFY | |||||||||||||
8 | 6br8A | 0.41 | 0.27 | 8.04 | 1.69 | CNFpred | ----------------------------------------------------------------------------------------------------------------------------MKKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILMENNSFIIRTINKVLADSNYIIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFKKVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTNERLHVLFSEIMASFKTKVSVEDLKKRKVNNIQGLISEISNNREMYKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIEFIFDFIQEHYI | |||||||||||||
9 | 6cb6A | 0.53 | 0.16 | 4.61 | 2.89 | HHsearch-2 | --KLRVLYDEFVTISKDNLERETGLSASDVD-DFDLNIF-TLVPVLAAAVCAITPTIEDDKIV--TKYCSYQSFSFWFLKSGAVVKSVYNKLDY-VKKEKFVATFRDL-LNVQTLISLNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6br8A | 0.41 | 0.27 | 7.95 | 5.88 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------KKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILEN-NSFIIRTINKVLADSNYIIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFKKVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTNERLHVLFSEI-ASFKTKVSVEDLKKRKVNNIQGLISEISNNRE-YKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIEFIFDFIQEHYI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |