>PF04841 (416 residues) NTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAVTRDPTKLVPVKGNAR PMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELICIQENATVFVYDMFGREKESYSIGD EASVTKIVEGKVFQSSAGTGVAVMTTSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVT EGRNSYCLLGRDREVIKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLL WLGSVDMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNADRSDFP YDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPASYLFEAQKKFEEKSYK SDEYLSMCREKIDLAVSECIEAASYEFCPETQKSLLRTAYFGKGFIRNHNPDEYMR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAVTRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELICIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMTTSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREVIKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSVDMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNADRSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPASYLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSLLRTAYFGKGFIRNHNPDEYMR | |||||||||||||||||||
1 | 4lg8A | 0.08 | 0.06 | 2.21 | 1.43 | SPARKS-K | EELVKPEELSKYRQVASHVGL-HSASIPG-ILALDLCPDTNKILTGGADK-----------NVVVFDKSEQILATLKGHTKKVTSVVFHPSQLVFSASPDATIRIWSVPASCVQVVRAHESA-----VTGLSLHATGDY-LLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFH-PDGLIFGTGTMDSQIKIWDLKERTNVANFP---GHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFD-----QSGTYLALGGTD-VQIYICKQWTEILHFTEHTGVAFGHHAIASTGMDRSLKFYSL---------------------------------------------------------------------------------------- | |||||||||||||
2 | 5wlcLL | 0.11 | 0.10 | 3.45 | 1.28 | FFAS-3D | --------------------------------QSAYDPSGQYLCYVT--------VALDKQRVGVQPQRWNENFLYLESKLKVTCLKWVNDTVAIILMNNGEIWLYSVANEVTYKFTTGNS---YEIKDIDL----MGNQLWCIDSSDAFYQFDLLQFKLLQHFRINN-CVQLNKLTIVPAGDSVAQLLVASHSISLIDIEEKKVVMT---FPGHVSPVSTLQVITNEFFISGAEGDRFLNVYDIHSGMTKCVLVAES--DIKELSHSGQA----DSIAVTTEDGSLEIFVDSSKKIQIVSKDGYNAFINKDLLNVLQNATMPYFKNLQWREIPNEKHVTGTVTVILSQALQSNDHSNNRDERVIRDTIFRLPALAVILLERLAERIARVWVKWCLI--IHGGYLVSIPNLMSTLS | |||||||||||||
3 | 5oqlA | 0.13 | 0.12 | 4.09 | 0.99 | HHpred | KSGEWLAFGASKLGQLLVWEWQSESYLKQAMNSLVYSPDGQRIVTAAD-----------DGKIKVWDVSGFCIVTFTEHTSGVTACEFAKKGSVLFTSLDGSVRAWDLIYRNFRTFTAPE---RLSFTCMAVDP----SGEVIAAIDSDIHIW-SVQTLLDRLSGH---EGPVSSLAFAPDG-S-VLVSSWDRTARIWSIFSRTQTSEPLQL---QSDVLDVAFRPDSKQIAISTLDGQLTFWSVSEAQQVSGVDGRRTKNFNTIRYSMDGTCLGNSKYICLYSVLLKFTVPEVSGVAFSPTGNSFCAASTEGLLVYSLDNTVQFDITPASTLAVLEK-EKDYLKALVMAFRLYQAPYTDIGLVVEQFVPRLLRFVAAQTEQSPMEFCLLWIRALIDK--HGPWLAAN-------- | |||||||||||||
4 | 5wlcLQ | 0.10 | 0.10 | 3.61 | 1.38 | MUSTER | SSSKLELVLTTSSNTIEYYSIPYEKRDPTSPAPLKTHTRTDVRSIDISDDNKLLATAS-NGSLKIWNITHKCIRTFE--CGYALTCKFLPGLLVILGTRNGELQLFDLASSSLLDTI--EDAHDAAIWSLDL---SDGKRLVTGSADKTVKFWDFKVLKLHHDTTL-ELTDDILCVRVS-PDDRYLAISLLDNTVKVFFLDSMKFYL---SLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLF-AHQDSIMNVKFLPQSHN----FFSCSKDAVVKYWDGEKFKLYAHQSEVWALAVATDGGFVVSSSHDHSIRI-LKAGERLMEA--LDLGIAEIEGLEAYNRDEQYIMDTLLRIMSQLFSYVLKFLKFIDTVMNKTLLHSHLPLICKNLFFIIKFNHKELVS | |||||||||||||
5 | 2gnqA | 0.12 | 0.08 | 2.79 | 1.77 | CNFpred | --------------------------------SVKFSPNGEWLASSSAD-----------KLIKIWGAYGKFEKTISGHKLGISDVAWSSSNLLVSASDDKTLKIWDVSGKCLKTLKGH----SNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKGKCLKTLPAH---SDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNKYCIFANFSVT----GGKWIVSGSENLVYIWNLKEIVQKLQGTDVVISTACHNIIASAALKTIKLWKSDC--------------------------------------------------------------------------------------- | |||||||||||||
6 | 5wlcLO | 0.12 | 0.11 | 3.99 | 0.39 | HHsearch-2 | HDQEKIYTVDGAVFVFRLYDLPDFLIQQLSVNTVSVNQTGEWLAFGSS----------KLGQLLVYEWSESYILKQQGHFDSTNSLAYSPDGSRVVTSEDGKIKVWDITGFCLATFEE----HTSSVTAVRAWDLIRYFNCLAVDPSGEVVCAGSLDNHVWSVQTLS-GHEPVSCLSFSQEN-S-VLASSWDKTIRIWSIFGRSQQVEPIEV---YSDVLALSMRPDGKEVAVSTLKGQISIFNIEDAKQVGNIDCRKDKFFTTIHYSFDGMAIGNNNSICLYDNELKFIGPEVTSVQFSPTANAFAAASTEGLLIYSTNDTILFDPFPHSTVEALREKQFLN--ALVMAFRVYEAIPIEIPLVASNIPPRILKFIGDFAIESQIEFNLIWIKALLSA--SGGYINEHKLFSTAMR | |||||||||||||
7 | 4lg8A | 0.09 | 0.07 | 2.62 | 1.74 | Neff-PPAS | -PEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGG----------ADKNVVVFDKSEQILATLKGHTKKVTSVVFHPSQLVFSASPDATIRIWSVPNASCVQVVRAHES-----AVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGL--IFGTGTMDSQIKIWD--LKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSG----TYLALGGTDVQIYICKQWTEILHFTEGLTTGVAFGHHAKFIASTGMDRSLKFYSL-------------------------------------------------------------------------------------- | |||||||||||||
8 | 2ymuA2 | 0.13 | 0.08 | 2.93 | 0.50 | HHsearch | ---------GSHMGVKERNRLETG--HSSSVWGVAFSPDGQTIASASD-----------DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASSDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGLLQTLTGH---SSSVWGVAFSPDD--QTIASADDKTVKLWNRNGQLL-QTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVRGVAFSPD------GQTIASSDKTVKLWNRNGQLVAFSPDGQTIASASSDKVKLWN-------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5wyjBB | 0.11 | 0.11 | 4.04 | 1.51 | PROSPECTOR2 | PASSWDIKTGDLVSKLSDGLPPGASDARGAKTYLEAHKDTDLLAVGVGEVGLYKLRSHKDSITGFWCQGEDWLETHIAHTGECWGLAVK-DDLLITTGTDSQVKIWKLDIEND---KMGGKLTEMGIFEKQSKQRGLKIEFITNSSDKTSFFYIQYSSFILHPFQTIRSLYKIKSWTTVSSSKLELVLTTSSNTIEYYSIPYEKRDPTSPAPLKECGYALTCKFLPGGLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDELTDDILCVRVSPDDRYLAISLLDNTVKISFDSKMIITSSADKVKYWDGEKFECIQKLYERLMEALDLVNKTPEQYIMDTLL--RIRMSQLEDALFSYVLKFLKFIDTVMQNKTLHSHLPLICKNLFFKLQINRVKTELRSKQQWN | |||||||||||||
10 | 4bzjA | 0.09 | 0.06 | 2.31 | 0.83 | SAM | ---------------------------------LDWSHNNKIIAGALD-----------NGSLELYSTEINSMARFSNHSSSVKTVKFNAKQDVLASGNNGEIFIWDMNKCT--PLTPGQSMSSVDEVISLAWNQ---SAHVFASAGSNFASIWDLKAEVIHLSY----TKQLSVVEWHPKS-TRVATATGSDSILIWDLRANTPLQTLNGH---QKGILSLDWCHDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-APEPDLFACASF------DNKIEVQTTNTSVFHLQAPAAHWAFGGKLVQITPDGKGVSTNPKISGL-ESNTTLSEALKTKDFKPINQRLVKVID---------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |