Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | TPHDAVFKQFLYHPDTARDFLDIYLPSTLRELCDLQTLKLESGSFIEDSLRASYSDVLWSLKTNEGDGYIYVVIEHQSSPDAHMAFRLMRYAMAAMQRHLDAGHKTLPLVIPMLFYHGALSPYPFSLCWLDEFDDPALARQLYSATFPLVDITVIPDDEIMQHRRIALLELMQKHIRKRDLMGLVEQLVSLLATGYANDSQL |
1 | 3s1sA | 0.08 | 0.07 | 2.90 | 0.84 | SPARKS-K | | CVFSYLPSYGDDEVSVYHPICEAALNQALVNTGLDSTY----EVVHHELVGSIEADFVIKNK-QTKK--YLLIVEVKRTKSQVSSTRYRLQAQSYVREANIKVEQHYYCLTIIDFFKHDPNKPV---------------VSQQIIEPSPIVVGNFTVSEFYNRLVEAFQNIIDISVNDATYKSSTANLVDILENRKDNSTSW |
2 | 5tgqA | 0.11 | 0.10 | 3.58 | 0.66 | FFAS-3D | | ---EEVIQRIIDDGAEVSDYLEDEFVKYISSGKSSSLYDAQGAPKEKTK---NPWDARCKFKFMDREEEIWIDFKMDSNPDIGTPNKIVKFI----------HEGNFYLVFVLVYYESKQDGVKYNNDYKKVYLLKDVNESFRINPKPQMQVNYRTREEFIHFFVKKWKESFERQIKSEKKEIMLKDLEDKLKN--SNDNSI |
3 | 5gkeA2 | 0.11 | 0.06 | 2.16 | 0.28 | HHpred | | --------ALTGSEAEMAELIFENPEV-----IEP-GFKPLFREKA---IGTGIVAVLGR--DSDG---NIVVLELKRRAELHAVRQLKSYVEILREEYG-------DKVRGILVAPSL-T-----SGAKRLLE---------KEGLEFRKLEPPK---------------------------------------------- |
4 | 2l82A | 0.13 | 0.10 | 3.60 | 0.67 | MUSTER | | --MSQIFVVFSSDPEILKEIVREIKRQGVR-------VVLLYSDQDEKRRRERLE------EFEKQGVDVRTV------ED--------KEDFRENIREIWERYPQLDVVVIVT---TDDKEW-----IKDFI---EEAKER-GVEVFVVYNNK-DDDRRKEAQQEFRSVDVRTVSDKEELIEQVRRFVRKVGSLEHHHHHH |
5 | 1q2lA | 0.05 | 0.04 | 1.90 | 0.75 | CNFpred | | --VLAYRDALK-TEAQATTLARDV-----QKQLGADGSEWCRNKDVVV----KKQSVIFEKAG-NSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNTEEQLGYAVFAFPMSVG----------------------RQWGMGFLLQSNDKQPSFLWERAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEE |
6 | 1vt4I | 0.12 | 0.11 | 4.03 | 0.99 | HHsearch-2 | | SGTLRLFWTLLSKQEMVQKFVEEVLRINYMSPIKPSMMTRMYIEYNDNLLELRPAKVLIQCKMDFK--IFWLNLK--NCNSPETVLEMLHSIQAELRRLLKSKYENC----LLVLLNVQNKAWNAFN-LSCKILLTTRFKQVLSATTISLDSMTLTPDEVKSTTNPRLSIIAESIRDCDKLTTIIESSLNVLRKMFDRLSVF |
7 | 5cwmA | 0.11 | 0.11 | 4.07 | 0.63 | Neff-PPAS | | -DPEDELKRVEKLVKEAEELLRQAKEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKEL |
8 | 5gkeA2 | 0.12 | 0.07 | 2.46 | 0.57 | HHsearch | | ---DYEELALTGSEAEMAELIFENPEV-I----EP-GFKPLFREKA---IGTGIVAVLGRD--SDG---NIVVLELKRRAELHAVRQLKSYVEILREEYGD-------KVRGILVAPSL-T-----SGAKRLLEK---------EGLEFRKLEPPKR--------------------------------------------- |
9 | 1wp9A | 0.12 | 0.11 | 3.85 | 0.60 | SP3 | | SPG--------STPEKIMEVINNLNSPDVRPYVKGIRFEWVRVDLPEKEVRKLLREMLRDLKPLAETGLL-------ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLY---HAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDPKMDKLKEIIREQLQRKQNS |
10 | 2aytA | 0.12 | 0.11 | 4.00 | 0.69 | PROSPECTOR2 | | MLLNLDLKELAQKEQTAEELLKETV-EVIGEAVGQDKIKLDIYSPFTHKEETEKYGVTIVIEGDKDYGIRYI-----GLPAGLEFTTLINGIFHVSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDF-----ALANDYITSKVIDASEN--QDLAEQFQVKGVAEFVGAQPENAFLGYIMAVYEKLKRE--KEQAL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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