>PF04704 (329 residues) DVVIEDVQCPDIMEEADVSETVIIPEQVLDTDVTEEVSLAHCTVPDDVLASDITTATMSI PEHVLTSDSMHVPDVGHVEHVVHDNVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANG IPVEQQDDDKSNCEDYLMISLDDAGKIEHDGSSEITMDAESEIDPCKVDGTCPEVIKVYI FKADPGEDDLGGTVDIVESEPENDHGVGLLDQSSSIRVPREKMVYMTVNDSQQEDEDLNV AEIADEVYMEVIVGEEDAAVAHEQQIDDTEIKTFMPIAWAAAYGNNTDGIENRNGTASAL LHIDESAGLGRLAKQKPKKRRRPDSRQYQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DVVIEDVQCPDIMEEADVSETVIIPEQVLDTDVTEEVSLAHCTVPDDVLASDITTATMSIPEHVLTSDSMHVPDVGHVEHVVHDNVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANGIPVEQQDDDKSNCEDYLMISLDDAGKIEHDGSSEITMDAESEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVGLLDQSSSIRVPREKMVYMTVNDSQQEDEDLNVAEIADEVYMEVIVGEEDAAVAHEQQIDDTEIKTFMPIAWAAAYGNNTDGIENRNGTASALLHIDESAGLGRLAKQKPKKRRRPDSRQYQ | |||||||||||||||||||
1 | 2tmaA | 0.10 | 0.09 | 3.16 | 1.63 | Neff-PPAS | ----------AIKKKMQMLKLDK--ENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGT-----EDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLE------------EAEKAADESERGMKVIESRAQKDEEKMEIQEIQL-------KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR-------AEFAERSVTKLEKSIDDLEDELY-AQKLKYKAISEELDHALNDMTSI--- | |||||||||||||
2 | 4uxeA | 0.05 | 0.05 | 2.29 | 1.11 | PROSPECTOR2 | PSIAQTVNGSLTLTQQTNLSAPLVSSSTGEFGGSLAANRTFTIRNTGEKGPASGANPAQSSIRVWGNQFGGGSDTTRSTVFEVGDDTSHHFYSQRNKDGNIAFNINGTVPININASGLNVNGTATFGRSVTANGENAFRAINGDYGFFIRNDASNTYFLLTAAGDQTGGFNGLRPLLINGLIIAKGVTINSGGLTVNSRIRSQGTKTSDLYTRAPTSDTVGFWSIEKTNEVTGLPYLERGEEVKSPGTLTQFGNTLDSLYQITYPTTPEARTTRWTRTWQKTKNSWSSFVQVFDGG-------NPPQPSDIGALPSDNATGNLTIRDFV | |||||||||||||
3 | 4aq1A | 0.09 | 0.08 | 3.18 | 0.75 | SPARKS-K | VVLTNTFKVTVTEVPVQVQNGFTLVDNLSNAPQN-TVAFNKAEKVTSMFAGEDTKNGDPETKPVDFKDAVRSLNPIIATAAINGSELLVTANAGQSGKASFTFTVDVKKEPVLQDIKVDATSVKGGGEVEGVNQKTIKVSAVDQYEIKFGTKGKVTVTTNTEGLVIKNVDSGSATDQFVVVATKDKIVNGKVEVKYFKNASDTTPTSTKVNVKADATPVGLDIVEIDVNASTADVDFINFESVENGNRLKKVVEVNGNV----LQFKGND-------ELTLLTSSSTVNVDVTADGITKRIPVKYINSASVPASATVATSPNSSDNDLT | |||||||||||||
4 | 1bciA | 0.14 | 0.05 | 1.57 | 0.46 | FFAS-3D | -----------------------------------------------------------------------------------------------------SHKFTVV------VLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--------RKRTRHFNNDINPDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEV---PFIFNQVTEMVLEMSLE---------------------------------------------------------------------------------------------------- | |||||||||||||
5 | 2g8sA2 | 0.10 | 0.05 | 1.71 | 0.30 | HHpred | ----------------------------------------------------------------------------------------------------------------------LDVVLAP----DFAQSRRIWLSYSEVG------------------------DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQPKTGNHF------GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV-RL---TDQGEIPDDNPFIKE--SGVRAEIW--SYGINPQGA-NP--WSNALWLNEHGPGGDEINIPQKKN---------- | |||||||||||||
6 | 5xxzA | 0.10 | 0.10 | 3.71 | 0.89 | MUSTER | DVAIAKLGDHLPQTLGKTPIKLKLTDGNYQTKETLKDNLETQSDTGLVTNQAQLAVVNQPQSQLTKNQDFFISPNEDGNKGLENNVYNDLTVNAKDDHQKQTPIWSSQAGAGASAIESTAWYGITARGSKVPGDYQYVVTYRDEHGKEHQKQYTISVNDKKPITQGRFDTING-VDHFTPDKTKALGSSGIVREEVFYLAKKNGRKFDVTEGKDGITVSDNKVYIPKNPDGSYTISKRDGVTLSDYYYLVEDRAGNVSFATLRDLKAVGKDKAVVNFGLDLPVPEDKQIVNDADGPIENLEYYNNSGNSLILLTYDTNAAKLESDKIVS | |||||||||||||
7 | 2r83A | 0.15 | 0.06 | 1.95 | 0.68 | CNFpred | ---------------------------------------------------------------------------------------------------------------------------------------DICFSLRYVP------AGKLTVVILEAKNLKKMDVLSDPYVKIHLMQN-------GKRLKKKKTTIKKNTLNPYYNESFSFEVIQKVQVVVTVLDYD----------GKNDAIGKVFVGY--------------NSTGAELRHWSDMLANP-------RRPIAQWHTLQVE----------------------- | |||||||||||||
8 | 4nl6A | 0.15 | 0.11 | 3.58 | 0.34 | HHsearch-2 | --------------------------------------MAMSSG----------GSGGGVPEVLFRRGTG-QSD-------------DSDIW---DDTALI-----------KAYDKAVASFKHAL-KNGDICETS---GKPKTTKRKAKKNKSQKKNTA---ASLQQWKVGDKCSAIWIYPATIASIDKRETCVVVYTGYGNREEQNLSDLSPICEVANNIEQNAQEN--------ENESQVTDESENS-RSPGNKSDNIKPKSPWNSFLPPPPPSCWLPPFCDSLDDADA---LGSMLISWYMSTGYYMGFRQNQKEGR-CSHSLN- | |||||||||||||
9 | 2bsgA | 0.11 | 0.10 | 3.64 | 1.53 | Neff-PPAS | ----EEILGADTQYGSEGSMNR--------PTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQ--INKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRNNTDVITSQGIRLSLTIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNI--------ASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQA | |||||||||||||
10 | 3khkA3 | 0.10 | 0.04 | 1.48 | 0.42 | HHsearch | -------------------MALLLANGSMSSNTNNEGEIRK-----TLVEQDLVECMVALPGQLFTNTQIPA-------------------------------CIWFLTKDKNA-----------KNGKRDRRGQVLFIDARKLGYKD-RVLRDFK--DED----I------QKLADTFHWQQEWENNQAGFCFSADLALIRNDF---------VLTPG---------------------------RYVG------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |