Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | TNRLAESLKLPTAFHFLPHLLDDSSSLQPSYIESKKRQGVSIVLGIPTVKRDKQSYLVETIDNLIANMDEEEQNDTMIVVYVGETDLEYVKLVAHQIRTRFASYIDSGFLEIIAPAASYYPNMNNLRQTLNDSQERVRWRSKQNLDFAFLMAYAQPKGAFYLQLEDDILTKKGFVTIMKNFALEKTAKKEHANWFVLDFCQLGFIGKMFKSADLPWLITFFQMFFNDKPVDWLLYHLIYTKVCSVEKDGKSCKQEMSKLWIHYKPSLFQHIGTQSSLRGKVQKLKDKQF |
1 | 1foaA1 | 0.11 | 0.08 | 2.87 | 1.01 | FFAS-3D | | -----------------------------------------IPILVIACDRST---VRRCLDKLLHYRPSAELFPIIVS---QDCGHEETAQVIASYGSAV---------THIRQPDLSNIA-------VQPDHRKFQGYYKIARHYRWALGQIFHNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADDSSKPELLYRTDFFPGLGWLLLAE----LWAELEPKWPKAFWDDWM---------------RRPEQRKGRACVRPEISRTMTFGRKGVSHGQLKFIKLNQQ |
2 | 1foaA | 0.12 | 0.09 | 3.15 | 1.07 | HHsearch-2 | | ---------------------------------------AVIPILVIACDRS--T-VRRCLDKLLHYRPSA--ELFPIIVSQDCGHEE----TA-QVIASYGS-----AVTHIRQPDLSNIA---VQP--DHRKFQG--YYKIARHYRWALGQIFHNYPAAVVVEDDLEVAPDFFQATYPLLKADPSNMVSKPELLYRTDFFPGLGWLLLAELWAELEP----KWPK--AFWD--DWMRRPE-----------QRKGRACVRPEISRTMTFGRKGVSHGQFQHLKQQFV |
3 | 1foaA1 | 0.12 | 0.09 | 3.15 | 1.12 | HHsearch | | ---------------------------------------AVIPILVIACDRS--T-VRRCLDKLLHYRPSA--ELFPIIVSQDCGHEET----A-QVIASYGS-----AVTHIRQPDLSNIAVQPDHR----KFQGYY---KIARHYRWALGQIFHNYPAAVVVEDDLEVAPDFFEYFQATYPLLKAWDNSKPELLYRTDFFPGLGWLLLAELWAELE----PKWPK--AFWD--DWMRRPE----------Q-RKGRACVRPEISRTMTFGRKGVSHGQFQHLKFQF- |
4 | 1foaA1 | 0.11 | 0.08 | 2.87 | 1.02 | SP3 | | ---------------------------------------AVIPILVIACDRST---VRRCLDKLLHYRPSAELFP---IIVSQDCGHEETAQVIASYGSAV---------THIR-----QPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADDSSKPELLYRTDFFPGLGWLLLAELWAELEPKW----PKAFWDDWMRRPEQRKGRKGVSHGQFFDQHLKFIKLNQQFVPFTQL------------------ |
5 | 1foaA1 | 0.12 | 0.08 | 2.95 | 0.74 | SPARKS-K | | ---------------------------------------AVIPILVIACDRST---VRRCLDKLLHYRP--SAELFPIIVSQDCGH----EETAQVIASY------GSAVTHIRQPDLSNIAVQPDH-------RKFQGYYKIARHYRWALGQIFHNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADP---SLWCVSAWNDPGLGWLLLAELWAELEPKW---PKAF-WDDWMR----------------RPEQRKGRCVRPEISRTMTFGRKGVSHGKFIKLNQQFV |
6 | 5ggfA2 | 0.13 | 0.09 | 3.25 | 0.99 | FFAS-3D | | --------------------------FSPDPLPDNKVLNVPVAVIA----GNRPNYLYRMLRSLLSAQGVSPQM----ITVFIDGYYEEPMDVVALFGLR-------------------------GIQHTPISIKNARVSQHYKASLTATFNL-FPEAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSEDPALLYRVETMPGLGWVLRRSLYKEELEPKWPTEKLWDWDMWMR---------------MPEQRRGRECIIPDVSRSYHFGIKHKFNTVPGQLR---- |
7 | 5vcmA | 0.14 | 0.11 | 3.89 | 0.66 | HHpred | | ----------------------QLNFDQTLRNVD--WAPRELVLVVQVHNRP--EYLRLLLDSLRKAQGI---DNVLVIFSHDFWST----EINQLIA-GV----NFPVLQVFFPFPNEFPGPRDCPRDLPKPDSFGAKFSQTKHHWWWKLHFVWEYAGLILFLEEDHYLAPDFYHVFKKLKQQECPSSFYGMDVKTWKSTEHNMGLALTRNAYQKLIECTDTFYDDYNWDWTLQYL--TVS---------CLP-KFWKVLVPQIPRIFHAGDCGCRPSTQAQI----- |
8 | 1foaA | 0.14 | 0.11 | 3.66 | 0.72 | MUSTER | | ---------------------------------------AVIPILVIA----DRSTVRRCLDKLLHYRP--SAELFPIIVSQ-DCGHEETAQVIASYGSAV---------THIR-----QPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPS-----LWCVSAWNDNGKMVDSSKPELL--YRTDFFPGLGWLLLAELWAELEPKWPKAFWDDWMRRPERACVRPEISRTMTFGRKGVSHGKFIKLNQQFV |
9 | 1fo9A | 0.13 | 0.08 | 2.90 | 0.85 | CNFpred | | ----------------------------------------VIPILVIACDR---STVRRCLDKLLHYR---SAELFPIIVSQDC----GHEETAQVIASYG------SAVTHIRQPDLSNIAVQPDHRK-------FQGYYKIARHYRWALGQIFHNYPAAVVVEDDLEVAPDFFEYFQATYPLLKAD---PSLWCVSAWNLLYRTDFFPWLLLAELWAELEPKWPKAFWDDWMRRPEQRK----------------RACVRPEISRTMTFG----------------- |
10 | 1foaA1 | 0.13 | 0.09 | 3.25 | 1.01 | HHsearch-2 | | ---------------------------------------AVIPILVIACDRS--T-VRRCLDKLLHYRPSA--ELFPIIVSQDCGHEE----TA-QVIASYGS-----AVTHIRQPDLSNIAVQPDHRKF----QGYY---KIARHYRWALGQIFHNYPAAVVVEDDLEVAPDFFEYFQATYPLLKAWDNSKPELLYRTDFFPGLGWLLLAELWAELE----PKWPK--AFWDD--WMRRPE-----------QRKGRACVRPEISRTMTFGRKGVSHGQFQHLKFIKL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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