>PF04642 (302 residues) MAGTLEDSKLRSLEKTKYQPSDSGSRPETPTSVSAGKKPETPTSGSGKALKDPAGKDPEK RAADKKRKQPEEISHSPPRSSRPRQEEKGAKLKGVVEDAPQNLVVLSSRESETRESERRN VPLPAPPMTFADTMRTLVPPGSAIAPFDEMKEVNKDNYLRFAGKLGKVKPELNQYPLCPS TPFSAATSFKRNEDENAKAVEKANKVMNRMKAAELQVQKLEVNNIDLTAKLEAGKNAYLD AVDKETQARADLKACEEKLKKMEEEQAALIAAARTDERRKVRAQFHDFSSKYGNFFKESE EV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MAGTLEDSKLRSLEKTKYQPSDSGSRPETPTSVSAGKKPETPTSGSGKALKDPAGKDPEKRAADKKRKQPEEISHSPPRSSRPRQEEKGAKLKGVVEDAPQNLVVLSSRESETRESERRNVPLPAPPMTFADTMRTLVPPGSAIAPFDEMKEVNKDNYLRFAGKLGKVKPELNQYPLCPSTPFSAATSFKRNEDENAKAVEKANKVMNRMKAAELQVQKLEVNNIDLTAKLEAGKNAYLDAVDKETQARADLKACEEKLKKMEEEQAALIAAARTDERRKVRAQFHDFSSKYGNFFKESEEV | |||||||||||||||||||
1 | 6f1tX1 | 0.14 | 0.06 | 2.15 | 1.07 | FFAS-3D | ---------------------------------------------------------------------------------------------------------------------------------------------------------QKEKDLVLAARLGKALLERN----------QDMSR--QYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELETDVKQLQDELERQQLHLREADRETRAVQELSEQNQRLLDQLSREVERQLSMQVHALKEDFREKNSSTN-- | |||||||||||||
2 | 2tmaA | 0.12 | 0.11 | 3.88 | 1.23 | Neff-PPAS | -------------------AIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVI---IESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDEDELYAQKLKYKAISEELDHALNDMTSI | |||||||||||||
3 | 3tnfB | 0.10 | 0.10 | 3.53 | 1.11 | PROSPECTOR2 | L-----DEYEQAIKRAQENIKKGEELEKKLGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKME------------ALIHKLSLEMEKQLETINNLPKENEEATKLLHKHNGLNLKLANLQDMLAVHQGEDWESIKDSPEKQKKAEHDFHKLKKLVHHNKGLETTIHKERVEETKQQLEDN-GKEKIEIANNISK | |||||||||||||
4 | 6f1te | 0.09 | 0.09 | 3.29 | 0.83 | SPARKS-K | QLIQRVKDDIESLHDKFKVQY--PQSQACKMSHVR----DLPTAYMKRVEDVLGKGWENHVEGQKLKQDGDSFRMKLNTQEIFDDWARKVQQRNL--GVSGRIFTIESTRVRGRTGNVLKLKVNFLPITLSKEVRNLKWLGFRVP--LAIVNKAHQANYPFAISLIESVRTYERTCEKVEERNTISLLVAGLKKEVQALIAEGIALAETVFNFQEKVDDLLIIEEKIDLEVRDHKTFSEILNRVQKAVDDLNLHLPIWVNKLDMEIERILGVRLQAGLRAWTQVLEESYSAVMGIVSEVEQY | |||||||||||||
5 | 5j1fA | 0.13 | 0.06 | 2.19 | 1.06 | FFAS-3D | ---------------------------------------------------------------------------------------------------------------------------------------------------------SHMAYAQFFSDVREAEGQLQKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVGSGNQEAQEAVTRLEAQHQALVTLWHQWQSLRRDVQLIRQALHSLELHYQAFLRDSQPEDRLMAEREYGSCSHHYQQLLQSLE-- | |||||||||||||
6 | 2v0oA | 0.14 | 0.07 | 2.50 | 0.31 | HHpred | -------------------------------------------------------------------------------------------------------------------------------RSMTKLASNYSQLGTFAPVWDVFKTSLANCHLDLVRKLQELIKEVQKY---GEEQVKSHKKTKEEVASITQALQKSKENNAKCVEQER-LKKEGATIEKAAVKSKKATDTYKLYVEKYALAKADFE--QKMTETAQKFQDIEETHLI-----HIKEIIGSLSNAIKEIHLQI--- | |||||||||||||
7 | 6aayA2 | 0.12 | 0.12 | 4.22 | 0.97 | MUSTER | LS-ELEHKKALFIKNTETNEDREHYWEIFPNPNYDFPKENISVNDKDFPIAGSILDREKQPVAGKKVKLLNQQYVSEVDKAVKAHQLKQRKASKPSIQNIIEEIVPINESNPKEAIVFGGQPTHSILYEFFDKWEKKKEKLEKKGEKELRKEIGKELEKKIVGKIQAQIQQIIDKDTNAKILKPDGNSTAIDKEKLIKDLKQEQNILQKLKDEQTVREKEYNDFIAYQDKNREINKVRNHKQYLKDNLKRKYPEYYREKGKVAVWLANDIKRFPTDFKNEWKGEQHSLLQKSLAYYEQCKEE | |||||||||||||
8 | 5xg2A | 0.13 | 0.07 | 2.52 | 0.75 | CNFpred | ---------------------------------------------------------------------------------------------------------------------------------FDTVVKELE-------EARKSLYEGEARIKRAEEEKERLKAEILTGEARLPGLRERAENLRRLVEEKRAEISKLSDLEKELELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALENPEARELTEKIRAVEKEIAALREELSRV | |||||||||||||
9 | 6f1tX2 | 0.10 | 0.03 | 1.11 | 0.50 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRV--------------LILERQGHDKDLQ-----------LHQSQ-LELQEVRLSYRQLQGGGGGGGGGGGGG | |||||||||||||
10 | 5xg2A | 0.07 | 0.06 | 2.30 | 1.17 | Neff-PPAS | -------------------------------------------------------TKGAIVRWGKRKEKLIEEIRAREEERNALVVRLGEIDRTFAVAREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKAEILTGEARLPGLRERAENLRRLVEEKRAEISELERRLSSITS----------QSFELRIKLSDLEKELELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALENPEARELTEKIRAVEKEIAALREELSRVEGKLEGL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |