>PF04631 (370 residues) IAFFLFVFLYIVYQPFYQAYLHIGHAQQDYNDTLDNRIDYIESVMRRRHYVPIEALPAIR FDTNLGTLAGDTIKCMSVPLFVSDIDLPMFDCSQICDNPSAAYFFVNETDVFVVNGHRLT VGGYCSTNSLPRNCNRETSVILMSLNQWTCIAEDPRYYAGTDNMTQLAGRQHFDRIMPGQ SDRNVLFDRLLGRPVNVTTNTFRRSWDELLEDGTRRFEMRCNARDNNNNLMFVNPLNPLE CLPNVCTNVSNVHTSVRPVFETGECDCGDEAVTRVTHIVPGDRTSMCASIIDGLDKSTAS YKYRVECVNLYTSILNYSNNKLLCPSDIFDSNTDAAFAFEVPGSYPLSRNGINEPTYRFY LDTRSRVNYN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IAFFLFVFLYIVYQPFYQAYLHIGHAQQDYNDTLDNRIDYIESVMRRRHYVPIEALPAIRFDTNLGTLAGDTIKCMSVPLFVSDIDLPMFDCSQICDNPSAAYFFVNETDVFVVNGHRLTVGGYCSTNSLPRNCNRETSVILMSLNQWTCIAEDPRYYAGTDNMTQLAGRQHFDRIMPGQSDRNVLFDRLLGRPVNVTTNTFRRSWDELLEDGTRRFEMRCNARDNNNNLMFVNPLNPLECLPNVCTNVSNVHTSVRPVFETGECDCGDEAVTRVTHIVPGDRTSMCASIIDGLDKSTASYKYRVECVNLYTSILNYSNNKLLCPSDIFDSNTDAAFAFEVPGSYPLSRNGINEPTYRFYLDTRSRVNYN | |||||||||||||||||||
1 | 3j8dA | 0.06 | 0.06 | 2.55 | 1.13 | Neff-PPAS | -------------QPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASMKLSCKASGYTFTNWWMHWVEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTIYYCARWFFPWYFDVWGTGTTVTVSRADAAPTVSI-------FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHTSPIVKSFNRSAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTGSLSSGVHTFPALLQSG--LYTLSSSVTVTSNTWPSQTITAHPASSTKVDKK | |||||||||||||
2 | 4uxeA | 0.07 | 0.06 | 2.46 | 1.18 | PROSPECTOR2 | ----------------------------------------------PSQFIRRDIAQTVNGSLTLTQQTNLSAPLVSSSTGEFGGSLAANRTFTIRNTGAPTSIVFEKGPASGANPAQSSIRVWGNQFGGGSDTTRSTVFEVGDDTSHHFYSQRNK----DGNIAFNINGTVPININASGLNVNGTATFGRSVTANGEFISKSANAFRAINGDYGFFIRNDASLTAAGDQTGGFNGLRPLLINNQSGQITIGEGLIIAKGVTI--NSGGLTVNSRIRSQGTKTSDLYTRAPTSDTVGFWSIDIVEKTNEVTGLPYLERGEEVKSPGTLTQFGNTLDSLYQDWITYPTTPEARTTRWTRTWQKTKNSWSWV | |||||||||||||
3 | 6f1tg | 0.09 | 0.08 | 2.93 | 0.94 | SPARKS-K | ---------------LTEEEKQQILHSEEFLSFFDHSTRIVERALSEERWSKHRVVSCLDWSSQYPELDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPVLWDNRSNKRTPVQ--RTPLSAAAHTHPVYCVNVVGT----QNAHNLISISTDGKICSWSLDMLSHPQDSMELV----HKQSKAVAVTSMSFPVGDVNNFEEGSVYTACGISEMFEGHQGPITHAAVGAVDFSHLFVTSSFDWTSTKNNKPLYSFEDNAGYVYDVM-WSPTHPALFACVDGMNNDTEVPTASISVE-----------GNPALNR----VRWTHSGREIAVGEGQIVIVGEQIAVPRNDEWARFGRTLAEI | |||||||||||||
4 | 1oqwA | 0.11 | 0.04 | 1.46 | 0.59 | FFAS-3D | IVVAIIGILAAIAIPQYQNYV-ARSEGASALASVNPLKTTVEEALSRGWSVK-----------SGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLT------------------FTMGGAGPKNKGKIITLTRTAADWKCTSDQDEQFIPKG------CSR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
5 | 4uzjA | 0.16 | 0.10 | 3.32 | 0.35 | HHpred | ----------------------------------------------------------------------------HRSLKRANLAN----TSITCNDGSHAGFYLRKHKKWIV---LLEGGWHCFDV--R-SCRSRWMRHLMTSSQWP----ETRDVGGILS------PH--PEENPYWHNANHVLAELIPVGLGRGGELMLDRIRDFLVNKQITVRGVSDSLDREP---Y-TPAASNEAVRQ----GWKLWQGLLP----EECT--KS--------YP-TEPWRCYYGYRLYPLKTPLFV-------FQWLFDEAQNVGAPVTPQQWNDNVSAVF---APSCI--GHGVLFKRDRCWEHSTR------ | |||||||||||||
6 | 4wa0A | 0.13 | 0.12 | 4.11 | 0.67 | MUSTER | --------TSVPSSPLDYAIFSKGALNTNKNLTVENG-----SVYSGGDLT-IDGGAVFNIDKGEVINQDSDSRCRDNNIVVRNIIYVEKSLKANRISPRSTNIDAK---TIYVGQEQLYGAGSYKFVQL---SDSNVKLAGPGVNEVSTLA----SIRGT---LEVI----DGATVTLKSNSAVYCNSLVRNGSRLILENGAKLYLATTPDASTIISIQNNGGTISYSSSFSYPSPPIDEIRNR-DYTSGLLTTPLPADSV-----GSNQLGSTADTSQTPP-QIVIYGESYINDNEARIEISARLGSPIVDFSTISRGNITFVGGGLTINGGSTFNINATGN-PYAGLTLKQPSPPIQQDIESNTGIQ | |||||||||||||
7 | 5dxuA | 0.07 | 0.02 | 0.77 | 0.51 | CNFpred | HHMKVLMKQGEALSKLKALNDFVKLSSQKT--PKPQTKELMHLCMRQEA--YLEALSHLQSP-------------LDPSTLLAEVCV--EQCTFMDSKMKPLWIMYSNSVGIIFKN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 5h3oA3 | 0.10 | 0.01 | 0.50 | 0.48 | HHsearch-2 | FVTLDLMCGVLIFATIVGNVGSMISNMSAARTEFQNKMDGIKQYMELRKV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3cm9S1 | 0.10 | 0.09 | 3.27 | 0.99 | Neff-PPAS | -----------------GGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDPEVANVAKFLCRQSSGENCDVVVNTL--GKRAPAFEGRILLNPQDKDGSFSVVITSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS--------EGWVKAQYEGRLSLLEEPGNGTFTVILN-----------------------QLTSR | |||||||||||||
10 | 3jc8Oa | 0.13 | 0.05 | 1.88 | 0.44 | HHsearch | VGALTAANFFMVIQPTEEEIGWAVAERRKLDLELADKLNERRREMDEQKLSEATELPEQRDIEELAQINDIGKKS---GLELSSVTPGKES-----VGGGEFFARIP--IKMTVS------GNY------------------------------HEIAL---------------FLQEANMRRIVNVNNIK----------FDSAKLK-NEKVVLQSEFQATTF-------RFV---------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |