>PF04515 (344 residues) VVMTVVMIIAFLTSIAIIRRILIATPVLKVAAKVIGEVQALIIFPVVPYFILAIFYMFWF SATLHLFSSGQVLRNDCNTDCCSYDLKLGKVNCDNCCGYSIHYTPHIGIAILFHLFGCYW ATQFFIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSMKRLLRYSLGSVAIGSLVVSA VEWVRFILECLRRKLKLVDSARESCFGKMTSSSSQCCLGCIDWTLKSVNRNAYIMIAITG KGFFKASVLATGLIMNNILRIGKVNVIGDVILFLGKLCVSLFCALFAFLMLDTHKYKSAH NKISSPLVPVVVSWALGFIVAKLFFQVVEMSIDTIILSFCQDAE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VVMTVVMIIAFLTSIAIIRRILIATPVLKVAAKVIGEVQALIIFPVVPYFILAIFYMFWFSATLHLFSSGQVLRNDCNTDCCSYDLKLGKVNCDNCCGYSIHYTPHIGIAILFHLFGCYWATQFFIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSMKRLLRYSLGSVAIGSLVVSAVEWVRFILECLRRKLKLVDSARESCFGKMTSSSSQCCLGCIDWTLKSVNRNAYIMIAITGKGFFKASVLATGLIMNNILRIGKVNVIGDVILFLGKLCVSLFCALFAFLMLDTHKYKSAHNKISSPLVPVVVSWALGFIVAKLFFQVVEMSIDTIILSFCQDAE | |||||||||||||||||||
1 | 6f2gA | 0.11 | 0.10 | 3.49 | 1.16 | SPARKS-K | ------VSGITALTVVVGTVIGAGIFFK--PTAVYGAAGAP-GLGLLAWFVAGIITIAGGLTVAEIGTIY-----PQTGGMMIYLEK--------------VYGRWLGFLVGWAQMVIY------YPANIAALAIIFATQFVNLFALSDSTIVPTAILTSIFLMGVNFYSGWIQTLATILKIPLVVIIVAGLGGVIRLVPFSVTSFGSALIATLFAYDGGLSIVMAVYLLTNIAYLFVLDSSQLATP--AALVASHLFIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKWFARINPKTNLPINGGLVMLGIAIVMILTFNQLTDLIVFVIWFFITLTFI | |||||||||||||
2 | 6c3iA | 0.09 | 0.08 | 3.10 | 1.21 | FFAS-3D | LWVILAANLMAMVIQNLSANLGIASGLPELIRERWPRPLVWFYWIQAELVAMATDLAEFLGAALAIQLLTGLP----------MFWGAVVTGVVTFWLLNLPLELAVGAFVLMIGVAYLVQVYLAVGIIGATVMPHVIYLHSALTQGRIQTDTTEEKRRLVRLNRVDAAMGLAGLINMSMLAVAAATFQTLTPLLG---------PAASVLFAVALLASGLSSSAVGTMAGDVIMQGFMGFH--IPLWLRRLITMLPAFIVILLGMDPSSVLILSQVILCFGVPFALVPLLLFTARRDVMGALVTRRSFTVIGWVIAVIIIALNGYLLWELL------------ | |||||||||||||
3 | 6cc4A | 0.10 | 0.10 | 3.53 | 1.02 | MUSTER | FPYILLISLASLVGAILNTW-FSIPAFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGPAILGVSVSQISLIINTIFASFLGSVSWMYYADRLMEFPSGVLGVALGTILLSFASGNHD----EYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLF-------YGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFY----RQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVVAVLVMSGVLLGMLHIMPWRLLRLMAVVLA--- | |||||||||||||
4 | 3rkoC | 0.09 | 0.07 | 2.77 | 1.41 | CNFpred | LSLLMVVLTGLLGVLAVLCSW-YQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDG----------------------------KTRITAATKFFIYTQASGLVMLIAILALVFVHYNA-----------TGVWTFNYEELLNTPM-GVEYLLMLGFFIAFAVKMPVVP--------------HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPL--FPNASAEFAPIAMWLGVIGIFYGAWMAFATDIKRLIAYTSVSHMGFVLIAIYT----------GSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDM | |||||||||||||
5 | 3l1lA | 0.09 | 0.08 | 3.14 | 1.21 | Neff-PPAS | LVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF--------------------FPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYAL | |||||||||||||
6 | 5oqtA | 0.11 | 0.10 | 3.61 | 1.20 | PROSPECTOR2 | LLVLSFILSGLACVFAALCYAEFASTAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGELPKALTSAYDPAKGTFI------------DLPAIIIVLFITFLLNAVIVAIKVAVVLLFLAVGVWYVKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQRDMPIGIIVSL---------LVCTLLYIAVSLVLTGIVPYEQLNVKNPVAFALNYIHQMMYGQTRLFYAISRDFAGIIPLNKLAELTNIGTLFAFITVSIGVLVLRKTQPDLKRAFRVPFVPVVPILAVLFCGYLVLQLPAMTWIGFVSWLLIGLVIELN | |||||||||||||
7 | 3gi9C | 0.11 | 0.09 | 3.38 | 1.14 | SPARKS-K | -------MELKNKKLSLWEAVSMAVGVMIGASIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGA-----------------------------KIVSNAGPIAFIHKAIIITGALSILLWMSYVISIALFAKGFAGYFLPLIAPINFNIAITEIGIVAFFTALNGSKAVGRAEFFIVLVKLLILGLFIFAGSYVIPDLAPSAVSGMIFASAIFFLSYM---------GFGVITNASKNVPRAIFISILIVMFVYVGVAISAIGGFLLISIGALFSISSAMNATISLAKDGELPEFFERKVWSTEGLYITSALGVLFALLMEGVASITSAVFMVIYLFVIL | |||||||||||||
8 | 4k1cA | 0.11 | 0.09 | 3.35 | 1.17 | FFAS-3D | FLLVFVPLGLTLTFLFNFLAIIPLAAILANATEELADK---AGNTIGGLLNATFGNAVELIVSIIALKKGQ-----------------------------------VRIVQASMLGSLLSNLLLVLGLCFIFGG------YNRVQQTFNQTAAQTMSSLLAIACASLLIPAAFGKILELSRGTSIVILIVYVLFLNPHHSLSVKSSLVILLGTTVIISFCADFLVGTIDNVVETFIGLIVIPIVGNAAESVLVAMKDKMDLALGVAIGSSLQVA--LFVTPFMVLVGWM-------IDVPMTLNFSTFETATLFIAVFLSNYLILDLEGVMSLAMYILIAM--- | |||||||||||||
9 | 3rkoB | 0.11 | 0.10 | 3.48 | 1.40 | CNFpred | TMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGF------------YYT----DPKNGAAAMKAFVVTRVGDVFLAFALFILYNEL-LMWATLMLLGGAVGKSAQLP--------LQTWLADAMAG--PTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQIKRVLAYSSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH-IPLVYLCFLVGGAALSALPL-----------TAGFFSKDEILAGAMMVAGLVGAFMTSLYTFRMIFIVFHG | |||||||||||||
10 | 6f2gA | 0.12 | 0.11 | 3.93 | 1.18 | Neff-PPAS | FVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPANIAALAIIFATQFVNLFALSDSTIVVAGLLYPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEM--------------KNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLFE---GIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMTNLPINGGLVMLGIAIVMILTGQFNQLTDLIVFVIWFFITLTFIAVIILRKTQPDIERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQPKNAFIGILLTLIGIPI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |