Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | PPRDHLVWSLFTTLYGNFCCLGLLAFVFSVKSRDRKVLGDYSGALSYGSTAKYLNITALVINILIVIIV |
1 | 1h2sB | 0.15 | 0.13 | 4.38 | 1.16 | MUSTER | | ----------GAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAAT |
2 | 5ow2A | 0.13 | 0.13 | 4.51 | 1.35 | SP3 | | -PLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLGRWKAVEKSVAMKHLTSFKRELGTLID |
3 | 6fv6A | 0.09 | 0.09 | 3.35 | 0.90 | SPARKS-K | | GDKVLAAHQIGLRIESISMIGFGVMIASTTLAGQNYGARNYRGMVHAVNTSAHFTALVMSLTGLILILF |
4 | 5unfA3 | 0.12 | 0.12 | 4.12 | 0.64 | FFAS-3D | | PPEKSAGIALMKNILGFIIPLIFIATCYFGIRKHLLKTNSYGKNRITRDQVLKMAAAVVLAFIICWLP- |
5 | 6fv6A | 0.12 | 0.10 | 3.61 | 0.27 | HHpred | | ------GLRIESIS---FMIGFGVMIASTTLAGQNYGARNYRGMVHAVNTSAHFTALVMSLTGLILILF |
6 | 2xndJ | 0.09 | 0.09 | 3.35 | 1.16 | MUSTER | | DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI |
7 | 3rkoC | 0.11 | 0.09 | 3.16 | 0.68 | CNFpred | | ----TAGSVDLAGILLKTAAYGLLRFSLPL---------FPNASAEFAPIAMWLGVIGIFYGAWMAFAQ |
8 | 3ayfA | 0.06 | 0.06 | 2.52 | 0.45 | HHsearch-2 | | MSFSAVWWSGASVTI---LILFIGIILYVFYRYQLSMQEALRPLTPSQVKAGKYFVVVSALQTMFGALL |
9 | 2xndJ | 0.09 | 0.09 | 3.35 | 0.94 | Neff-PPAS | | DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI |
10 | 2xpiA2 | 0.10 | 0.07 | 2.67 | 0.34 | HHsearch | | -------------------GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDLHLASLHESGLIS- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|