Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | ISSKISSDFDKQSALKVITGLNNFNIPQIKQMALASEIAKVTYLDIVADTDIIKEVESVSKIPICVSAVKSKELLKCQKTGVNILEIGNYDCFYEQGRLFHSEEIKLISKETRNLLPHATLCVTLPHILKIEEQVKLASDLQRIGIDMIQTEGKSTSISKTDHLSGMIQKSASTFSSTYTVSSKIRLPIISASGISSLTSPIAFLYGASGIGIGSNIRRLQDIGSMVIYIYEVQAAISSNHN |
1 | 5zjbA | 0.13 | 0.12 | 4.00 | 1.07 | SPARKS-K | | NIEELKRFLNGQTVVSIQPVSPLDKTDFIVAMAIAVEQAGAKALRIEG-VSNVAAVSAAVTIPIIGIVKRVSDVDGLANAGATVIAFDATNRTRPES-------RERIAQAIKNTG--CFAMADCST-------FEDGLWANSQGVEIVGSTLS--------GYVGDIEPTVPDFQLVKAFSEA-GFFTMAEGRYNTELAAKAIESGAVAVTVGSALTR---LEVVTQWFNNATQAAGERKC |
2 | 1h1yA | 0.13 | 0.11 | 3.85 | 1.71 | FFAS-3D | | -------------AAKIAPSMLSSDFANLAAEADRMVRLGADWLHMTIGAPVIQSLRKHTKAYLDCHLMVSDYVEPLAKAGASGFTFHIEVSR---------DNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEA--ENPVELVLVMTVEPGFGGQKFMP-------EMMEKVRALRKKYSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG------ |
3 | 2prmA | 0.16 | 0.14 | 4.82 | 2.22 | HHpred | | ------------NPVGIAAG---FDKH--GEAVDGLYKMGFGFVEIGSNPVVEHRLRAEDGLPLGVNLGKAEDYAEGVRPLADYLVV-NVSSPNTAGLRLGKAELRRLLTKVLQERHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRSETGGLSGKPLRD-LSTQTIREMYALTRVPIIGVGGVSSGQDALKIRAGASLVQLYTALTF-WGPPVVGKVKRELEALLKEQGF |
4 | 5zjbA | 0.14 | 0.12 | 4.22 | 1.25 | MUSTER | | NIEELKRFLNGQTVVSIQPGSPLDKTDFIVAMAIAVEQAGAKALRIE-GVSNVAAVSAAVTIPIIGIVKFVSDVDGLANAGATVIAFDATNRTRPES-------RERIAQAIKNT---CFAMADCST-------FEDGLWANSQGVEIVGSTL--------SGYVGDIEPTVPDFQLVKAFSEA-GFFTMAEGRYNTELAAKAIESGAVAVTVGSALT--RLEVVTQWFNNATQAAGERKC- |
5 | 4qccA | 0.14 | 0.11 | 3.67 | 1.28 | CNFpred | | ----------------LIAILRGITPDEALAHVGAVIDAGFDAVEIPLWEQSIPAIVDAYKALIGAGTVKPEQVDALARMGCQLIVTPNI--------------HSEVIRRAVGY--GMTVCPGCA-------TATEAFTALEAGAQALKIFPSS----------------AFGPQYIKALKAVLPIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGSVERTAQQAAAFVKAYREAQK |
6 | 2prmA | 0.14 | 0.14 | 4.64 | 0.47 | HHsearch-2 | | LEVRVL-GHKFRNPVGIAAGFD-----KHGEAVDGLYKMGFGFVEIGSKSVVEHRLRARDGLPLGVNLGKAEDYAEGVGPLADYLVV-NVSSPNTAGLRQGKAELRRLLTKVLQERHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPETGGLSGKPLRD-LSTQTIREMYALTRVPIIGVGGVSSGQDALKIRAGASLVQLYTALTF-WGPPVVGKVKRELEALLKEQGF |
7 | 5zknA | 0.18 | 0.15 | 5.00 | 1.20 | Neff-PPAS | | FMNKILESIRGKLIVSCQALEPLHSSFIMGRMAYAAYSGGAAGIRANT-VEDIKEIKKNVSLPIIGIIKKIKEVEDLINEGVQIIAIDAT-----KRERPDRKDLKNFIAEIKEKYPNQLFMADI-------SSVDEALYAEKIGFDIVGTTLVGYTDYTKNY---------KALEELKKVVKVVKIPVIAEGNIDTLKAKKALEIGAFAVVVGGAITR------PQQITKKFVDEMK---- |
8 | 1h1yA | 0.12 | 0.10 | 3.62 | 0.67 | HHsearch | | -------------AAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIGAPVIQSLRKHTKAYLDCHLTNPSYVEPLAKAGASGFTFHIEVSR---------DNWQELIQSIKAK--GMRPGVSLRPGTPV----EEVFPLVENPVELVLVM------TVEPGFGGQKFMP-EMMEKVRALRKKYSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG---S-- |
9 | 5zjbA | 0.14 | 0.12 | 4.12 | 1.51 | PROSPECTOR2 | | KNEELKRFLNGQTVVSIVTGSPLDKTDFIVAMAIAVEQAGAKALRIE-GVSNVAAVSAAVTIPIIGIVPFVSDVDGLANAGATVIAFDATNRTRPES-------RERIAQAIKNT--GCFAMADCST-------FEDGLWANSQGVEIVGSTLS--------GYVGDIEPTVPDFQLVKAFSE-AGFFTMAEGRYNTPELAKAIESGAVAVTVGSALT---RLEVVTQWFNNATQAAGERKC |
10 | 3qjaA | 0.14 | 0.11 | 3.79 | 1.48 | SAM | | ---DVMAALREP-GIGVIAEVK-----DPAKLAQAYQDGGARIVSVVTEQDDLDAVRASVSIPVLRKDVQPYQIHEARAHGADMLLLIV--------AALEQSVLVSMLDRTESL--GMTALV------EVHTEQE-ADRALKAGAKVIG------VNARD-----------VDRDCFARIAPGLSVIRIAESGVRGTADLLYAGAGADAVLVGEGLVTSGDPRAAVADLVT---------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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