>PF04443 (375 residues) MPVNNENLTSVLDARPFELSEEQKSPLFKANLLAELVHHYQCNEMYRKFCQKNKFDPLVF DGEVADIPPIPVHIFKAIGHKLSSVSDDTIKAKLQSSATSGVPSTILLDKVTARRQTRAM ARVMQEVLGPKRRPFCIMDIDPTSPNATNLGARIAAVKGYLNFASTSKYFIDADSPSAPL EFLEQKFVEHLNSLASEEPLIIFGFTFVLYHTVFKTLKDKGISFQLPKGSQVIHIGGWKK LESEKVDKITFNRDIASVLGISPDDVVDIYGFTEQMGLNYPDCKAGWKHIHAYSDVIIRD ESNLEVCGPGKVGLLEFVSPLPHSYPGNVVLTDDLGVIEESLCECGKAGKRFKVIGRAKK AEVRGCGDVMSEKLT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MPVNNENLTSVLDARPFELSEEQKSPLFKANLLAELVHHYQCNEMYRKFCQKNKFDPLVFDGEVADIPPIPVHIFKAIGHKLSSVSDDTIKAKLQSSATSGVPSTILLDKVTARRQTRAMARVMQEVLGPKRRPFCIMDIDPTSPNATNLGARIAAVKGYLNFASTSKYFIDADSPSAPLEFLEQKFVEHLNSLASEEPLIIFGFTFVLYHTVFKTLKDKGISFQLPKGSQVIHIGGWKKLESEKVDKITFNRDIASVLGISPDDVVDIYGFTEQMGLNYPDCKAGWKHIHAYSDVIIRDESNLEVCGPGKVGLLEFVSPLPHSYPGNVVLTDDLGVIEESLCECGKAGKRFKVIGRAKKAEVRGCGDVMSEKLT | |||||||||||||||||||
1 | 2y4oA | 0.19 | 0.17 | 5.35 | 1.96 | SPARKS-K | -------HPAAALEPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDL-KSLADLAKFPFNDLRDNPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF--------TGGLGIHYGAERLGCMVVPMSGGQ-------TEKQVQLIRDFE---PKIILVTP-SYMLNLIDEMVRQGMDPAESSLKIGIFGAE-------PWTQ-ALRNEVETRVGI---DALDIYGLSEVMGGVACECVETKDGPVDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTA---RAMRRLAITGRSDDMIVRGVNVFPSQIEE | |||||||||||||
2 | 3qovA | 0.15 | 0.13 | 4.34 | 2.97 | FFAS-3D | ---STQYWEEEIE-----ISREKLQELQLQRLKKTINIA-ANSPYYKEVFSKNGITGDSIQSDIRKIPFTTKSDRANYPFGLVAGDKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL-YVGIRKTDVFQNSSGYGF-------TGGLGFQYGAERLGCLT------------VPAAAGNSKRQIKFISDFKTTALHAIPSYAIR-LAEVFQEEGIDPRETTLKTLVIGA--------EPHTDEQRRKIERLNV----KAYNSFGTENGPGVAFECQEQNGHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDR--EPLIRYRTRDLTRILPGKCPCGRTHLRIDIKGRSDDFIIKGVNIQVEKILV | |||||||||||||
3 | 2y4oA | 0.20 | 0.17 | 5.39 | 2.36 | HHpred | -----------ALEPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDSLADLAKFPFSTKNDLRDNPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGGRPGDTLHN-AFG----YGLFTGGLGIHYGAERLGCM---VVPM-S-----GGQTEKQVQLIRDF---EPKIILVTPSYML-NLIDEMVRQGMDPASSLKI-GIFGA-------EPWT-QALRNEVETRVGI---DALDIYGLSEVMGGVACECVTDGPVIWEHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTARA---MRRLAITGRSDDMIVRGV--------- | |||||||||||||
4 | 2y4oA | 0.18 | 0.16 | 5.29 | 1.69 | MUSTER | HPAAA--------EPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLLADLAKFPFSTKNDLRDYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGY------GLFTGGLGIHYGAERL--GCMVVPMSGGQ----------TEKQVQLIRDFEPKIILVT-PSYMLNLIDEMVRQGMDPAESSLKIGIFGA-------EPWT-QALRNEVETRVGID---ALDIYGLSEVMGPGVACEKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTARAMRR--LAKITGRSDDMIVRGVNVFPSQIEE | |||||||||||||
5 | 2y4oA | 0.18 | 0.16 | 5.19 | 2.37 | CNFpred | ---------------IETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLLADLAKFPFSTKNDLRDNYFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYG-------LFTGGLGIHYGAERLGCMVVPMS--------GGQTEKQVQLIRDF---EPKIILVTPSYMLNLI-DEMVRQGMDPAESSLKIGIFGAEPW--------TQALRNEVETRVG---IDALDIYGLSEVMGPGVACECKDGPVIWDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTARAMRR--LAKITGRSDMLIVRGVNVFPSQIEE | |||||||||||||
6 | 2y4oA | 0.20 | 0.18 | 5.71 | 1.06 | HHsearch-2 | ------HPAAAL-EPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDD-LKSLADLAKFPFNDLRDNYFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGRPGDTLHNAFGYGLFTG-----GLGI-HYGAE--RLGCMVVPMS-------GGQTEKQVQLIRDF---EPKIILVTPSYMLN-LIDEMVRQGMDPAESSLKIGIFGA-------EPWT-QALRNEVETRVGI---DALDIYGLSEVMGGVACECVKDGPVIWDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTAR---AMRRLKITGRSDDMIVRGVNVFPSQIEE | |||||||||||||
7 | 2y4oA | 0.18 | 0.16 | 5.13 | 2.51 | Neff-PPAS | -------------EPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKADLAKFPFSTKNDLRDYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG------YGLFTGGLGIHYGAERLG------------CMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWT---------QALRNEVETRVGI---DALDIYGLSEVMGPGVACEKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPP--TARAMRRLAKITGRSDDMIVRGVNVFPSQIEE | |||||||||||||
8 | 3qovA | 0.17 | 0.15 | 4.97 | 1.62 | HHsearch | ------GSTQYWE-EEIEISREKLQELQLQRLKKTINIAAN-SPYYKEVFSKNGITGDS-IQSLDDIRKIPFTTKRANPFGLVAGDKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--VGRKTDVFQNSSGYGFTGG------LGF-QYGAE--RLGCLTVPAA-------AGNSKRQIKFISDF---KTTALHAIPSYAIR-LAEVFQEEGIDPRETTLKTLVIGAE-------PHT-DEQRRKIE-RLNV---KAYNSFG-TENGPGVAFECQENG-HFWDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE--PLIRYRTRDLTRILPGKCPCGRTHLRIDIKGRSDDFIIKGVNIFP-QVE- | |||||||||||||
9 | 2y4oA | 0.19 | 0.17 | 5.43 | 3.00 | PROSPECTOR2 | HPAAA-------LEPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDD-LKSLADLAKFPNDLRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF--------TGGLGIHYGAERLGCMVVPMSGG-------QTEKQVQLIRDF---EPKIILVTPSYMLN-LIDEMVRQGMDPAESSLKIGIFGAE-------PWT-QALRNEVETRVGI---DALDIYGLSEVMGPGVACECVETKDWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTARAMRR--LAKITGRSDDMIVRGVNVFPSQIEQ | |||||||||||||
10 | 2y4oA | 0.20 | 0.17 | 5.39 | 3.90 | SAM | --------------PIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDD-LKSLADLAKFPF-LRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR-AAGRPGDTLHNAFGYGLFTG------L---GIHYGAERLGCMVVPMS-------GGQTEKQVQLIRDF---EPKIILVTPSYMLN-LIDEMVRQGMDPAESSLKIGIFGAE-------PWT-QALRNEVETRVGI---DALDIYGLSEVMGGVACECVKDGPVIWDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPP--------TARKITGRSDDMIVRGVNVFPSQIEE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |