>PF04184 (536 residues) WSWTYLWTVWFFLVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLI LIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWR NPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRER NPQARISAAHEALEINECATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHH GSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLE ALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEM NAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALN LLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTA GLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | WSWTYLWTVWFFLVLFLVYILRVPLRINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINECATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLMKEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRRGLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLHCTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLTHQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTR | |||||||||||||||||||
1 | 5o9zG | 0.13 | 0.12 | 4.18 | 1.26 | FFAS-3D | ----------AWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAATAKAVVAQAVRHLIYIRAAELETDIRAKKRV--LRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPLALARLETYENLNKARENIPEKIIDRAITSLRANG----VEINREQWIQDAEECDRAGSVATCQAVMRAVIGIEDRKHTWMEDADVAHNALECARAIYAYALQAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLM--GAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWAAQDLCEEAFPKLWMMKGQIEEQEKAREAYNQGLKKCPHSTPLWLLLSRL------EEKIGQLTRARAILEKSRLKKNPGLWLESVRLEYRGLKNIANTLMAKALQECPNSGILEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSKAREWFHRTVKIDSDLGDAWAFFYKFELQEQQEEVRKRCESAEPRHLWCAVSK | |||||||||||||
2 | 3zgqA | 0.12 | 0.10 | 3.37 | 1.10 | MUSTER | --------------------------SEIRKDTLKAILLELE------------------CHFTW---------LKEDIDLFEVEDTIGQQLEFLTTKS---------------------RLALYNLLAYVKHLK----KDALECLEQAEEIIQQEHSDKEEVRSLVTWGNYAWVYYHMDQLEEAQKYTGKIGNVCKCPETDCEKGWAGGKYYQKAKAAFEKALEVPEFNIGYAITVYRLDPLRKAVTLNPDNS--YIKVFLALKLQDVHAEAEGEKYIEEILDQISSQ--PYVLRYAAKFYRRKNSWNKALELLKKALEVT-PTSSFLHHQMGLCYRAQMIQIKRPKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANM-----YAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHY-------------GRFQEFHRKSENTAIHHYLEA---LKVKD--RSPLRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYKLE-KRQAAEYYEKAQKIDPAEFLTALCE | |||||||||||||
3 | 4bujB | 0.13 | 0.10 | 3.38 | 1.27 | CNFpred | --ESFQIGLVEVLMRCSLDLYKSVSIAKDTIERIKIIISELKCEN-------QQVWIYLSQVLRLFIWIE---SKVDTLPVESLVSIFENSQFSGSEEIDSVDNIKIDTLLDSTTDDNVSIACKFLIL----------------ASKYSVS-VRASYWYN--------IGISELTAFITLKEPQYRDAAIFAFKK-NTSETWIGLGIAT-INFRVSQHCFIKATALEPK-------------------------ATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQ--DSSPWLGMALILEEQGDIIGSSKLFAHSFILSRSKAAQFMYAKNVLENHINN-----------GDDERDIETVEKLTTASI----ALEQFFKKSP-----------DSQFALQCALLTLERLHHYENANELANRLI----------------------GILEKKFEKT-------------QDERELFNFAIIKGQFARIHLGLGNFELSIENADLSQGIIKISNHICLGLSYFFLFDQTLNQFQE | |||||||||||||
4 | 5dseA | 0.09 | 0.08 | 3.12 | 1.53 | Neff-PPAS | VITCYEKAGDIALLYLQEIERVLGFFLETGLQRAHVLYFKNG-----NLTRGVGRFRELLRAVETRTTQNLRMTIARQLAEILLRGMCEQSYWNPLEDPFCPQENTEEALLLLLISESMANVVYDLLTIALGRRGQ--YEMLSECLERAMKF---------AFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKDDATIPLLAAKLCMHWLEEAEKFAKTVVT---------------SEFKAKGYLALGLTYSLQATDASLRGMQEVLQRKALLAFQRAHSLSPTD--HQAAFYLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLLSAQKHYHDALDMALSEYPENFILLFSKVKLQSLCRGPDEALLTCKHMLQIWKSCYLHPWMTLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQIAESMDEARRWYELAISPTH-------------------VKSMQRLALILHQLGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATE | |||||||||||||
5 | 5lj3T | 0.09 | 0.08 | 2.95 | 1.29 | PROSPECTOR2 | LTWKRYIEYWKDKQIRWLYIWEDYIRWESETSRIFWLFQKSCVRDCDRICLSELAIEMIRHALASSLMK-----------------------MEMHRKVWDPVIKFVEEKVESTDEAELINVLLVKGFTIWSSHILERYQQKRNESLATLALTRNITIKSVYEKYLLN--FNYLASLEKLGDNQYEEFMRQMNGPDKWLFLILSLAKYYIGRLDSCGDLLKKSLQQFDRIYNFYLLFEQECSQFILGKLKENDDWTEKLQAHMATFESLINLYDIYLNDVALRQDGTPGSFGRLWCSYGDLYWRSNAISTARKLWTQVPYPYIEDLEEIYLNWADRELTNPEILLSLRIWSKYIDYLEANKTKMAYNTVIDLRPAMAENFALFLQNYEVMESFLFPPEIQYELWIEYLEVATSHPEHIRFLFEKALK-------------------------------------NLCSNGIDCKTIFIAYSVFEEIEILRRGAVIGLESRLQLWRMCISKAESVTRELYQECIQILEFVIKFSELK | |||||||||||||
6 | 6af0A | 0.10 | 0.09 | 3.21 | 1.23 | FFAS-3D | ---NAIASDGWYLLARKEHYDGNLERASDYYRRADDARGGAERGYLPAKFGAAQLLGEAKLRLEKMIQHSKNYEAMILLGTLYA----------EEVFANQSAAVKEDKSAEAKK------AISLLEGV-------------RSAWKDPKRNLSPDA----------AVLLNLARLYESESPDKALQCLQQVEQLEIDPQLLNNIGCSQEGKHRLATEFFQAALDSCARI-----SQTENDLDIDA-------LLTTIPFNLGRSYEYEGDIDKAIETYEQLLSRHS--DYTDARTRLAYIKLRRNPNKEGPDAVAKLYQEN-PSDLEVRGLYGWFLSKVEQRHYKHTLQSYDKHDRYALRAVEFFDKALQLDPKNAYAAQGIAIA-----LVEDRKDYKNALQIFIKVRETIQDAHVYVNMGHIY----------AELRQF------------SKAIESYEILSKEGKANDAGIISCLGRTWLNKGRAERNLDAYKMALDQAKKAVKFNVAFVQIQIALVLHSMREEEAAEGLEE | |||||||||||||
7 | 5dseA | 0.11 | 0.10 | 3.44 | 1.08 | MUSTER | VITCYEKAGDIALLYLQEIERVLGFFLETGLQRAHVLYF---------LTRGVGRFRELLRAVETRTTQNLRMTIARQLAEILLR-------GMCEQSYWNPLEDPFCPQENTEE------ALLLLLISESMA-SVVYDLLTIALGRRGMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDATIPLLAAKLSLHWLEEAEKFAKTVVTSEFKAKGYSLQATDASLRGMQEVLQRSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQGDD--ANSLHLLALLLSAQKHYHDALNIIDMALSEY-PENFILLFSKVKLQSLCRG----------------PDEALLTCKHMLQIWKSCYLHPWM--------------TLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQIAE-MDEARRWYEEALSPTHVKSLILHQLG------YSLAEKILRDAVQV---TAHEVWNGLGEVLQAQ-DAAATECFLTALELEASS-FTIIPR | |||||||||||||
8 | 6c9mA | 0.10 | 0.08 | 3.00 | 1.20 | CNFpred | QILRDLSLLQIQMRDGYRETRYQLLQLRSWIGYAIAYHLLDYEMAAKILEEF-YEYSELLLYQNQVLREAG----LYREALEHLCTYEKQI-CDKLAVEETKGELLLQLCRLEDAADVYRGLQERNNWAYYKGLEKALKPERLKIYEEAWTKY----------PRGLVPRRLPLNFLSGEKFKECLDKFLRMNFSKGCPPVFNTLRSLY--KDKEKVAIIEELVVGYETSLKSCRLFNPNDDGKEEP----PTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPT--LIELFLVKAKIYKHAGNIKEAARWMDEAQALTADRFINSKCAKYMLKANL------------------IKEAEEMCSKFTREGTSAVENLNEMQ-------------CMWFQTECAQAYKAMNKFGEALKKCHEIERH-------------------------FIEITDDQFDF--------HTYCMRKITLRSYVDLLKLED-FYFKAARIAIEIYLKLHLEEAIKFLTPLKNLVKNKIETHLFA | |||||||||||||
9 | 3zgqA | 0.11 | 0.09 | 3.36 | 1.47 | Neff-PPAS | -SEIRKDTLKAILLELECHFTWNLLKEDIDLFEVEDTIGQQLEFLTTKSRLALYNLLAYVKHLKNKDALECLEQAEEIIQQE------------------------HSDKEEVRSLVTWGNYAWVYYHMD-------QLEEAQKYTGKIGNVLSSPSNYKLECPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEDNPEFNIGYAITVYRVKSFSLGPLRKAVTLNPDN-------------------------SYIKVFLALKLQDVHAEAEGEKYIEEILDQIS--SQPYVLRYAAKFYRRKNSWNKALELLKKALEVT-PTSSFLHHQMGLCYRAQMIQIKRPKGKDKLKVDELISSAIFHFKAAMERDS----------------------MFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDR---SPLRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQNAEFLTALCE | |||||||||||||
10 | 4uzyA | 0.09 | 0.07 | 2.78 | 1.29 | PROSPECTOR2 | AALSLLEDYKLYYAQSLYAVTTLLVACSYELTGCRRQLDKCAPEDPDTMVYQPELLYNIALCYYLKHLAEIIEKAVRE---------------HPELSVGSDGMEVRSVGNSQTLKETALIEAFNLKAAIEYT-----MKNVKEALTDMPPR--------AEEELDPVTLHNSALINMDSDPTGGFKKLNFLLQSPPPPETFANLLLPSHGFYDLAADVLAENPQYAGKLLSPDLYAIGRYKSPEEAFRRFDELATRHVEQLRRLTKQIQDIKRAINEYDEALEA-----YIPGLMAMASIYWDMELYSNVEKIFRQSAEF-CSEHEVWKLNVAHTFFMQDNH---------------YKEAIRYYEPVVKKNADNLLG-----------------VTAIVLANLCVSYIMTSQNEEAEELMRKVEKEEERSSM-------------------------------QDPDKPCFHLCIINLVI----GTLYCAKGNYEFGVSRIIKSLWYYAKRCFLALIENLAKVLKDSSFTEILR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |