Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | EMEVGVGKHKVASRNLRAALPDICGFVTRFLESQKKDDGSLAEGTTVLVACETGKDLSVAVALAICLWCFDQQDNYRAPDTKTIFNKDMVRHRLGSIMTACPEANPGRASLQSVNSFL |
1 | 5m43A | 0.22 | 0.20 | 6.41 | 1.55 | SPARKS-K | | HLSIDIDDMEDQ--DILIHLPKIVRFIDSGLRG-----IAVASPGVVLVHCAMGKSRSVTAIIAYLLWKYP---YRFGKSDPNISAKEAVSRALEWVRETRPIAGPNDGFMRQLEMWW |
2 | 5m43A | 0.22 | 0.20 | 6.40 | 1.81 | FFAS-3D | | HLSIDIDDME--DQDILIHLPKIVRFIDSGLR-----GIAVASPGVVLVHCAMGKSRSVTAIIAYLLWKYPYR---FGKSDPNISAKEAVSRALEWVRETRPIAGPNDGFMRQLEMW- |
3 | 5m43A | 0.22 | 0.20 | 6.41 | 1.84 | HHpred | | HLSIDID--DMEDQDILIHLPKIVRFIDSGLRGIAV-----ASPGVVLVHCAMGKSRSVTAIIAYLLWKYPYRFGKS---DPNISAKEAVSRALEWVRETRPIAGPNDGFMRQLEMWW |
4 | 5m43A | 0.22 | 0.20 | 6.41 | 1.44 | MUSTER | | HLSIDIDDM--EDQDILIHLPKIVRFIDSGLR-----GIAVASPGVVLVHCAMGKSRSVTAIIAYLLWKYPYRFGKSDPNIS---AKEAVSRALEWVRETRPIAGPNDGFMRQLEMWW |
5 | 5m43A | 0.22 | 0.20 | 6.40 | 1.07 | CNFpred | | HLSIDIDDM--EDQDILIHLPKIVRFIDSGLRGI------VASPGVVLVHCAMGKSRSVTAIIAYLLWKYPYRFGKS---DPNISAKEAVSRALEWVRETRPIAGPNDGFMRQLEMWW |
6 | 4rkkA | 0.16 | 0.12 | 3.97 | 1.07 | HHsearch-2 | | YIWMPTP--DMSTEGRVQMLPQAVCLLHALLE----------KGHIVYVHSNAGVGRSTAAVCGWLQYVMGW----------------NLRKVQYFLMAKRPAVYIDEEALARAQEDF |
7 | 5m43A | 0.22 | 0.20 | 6.41 | 1.52 | Neff-PPAS | | HLSIDIDDMEDQ--DILIHLPKIVRFIDSGLRGIAV-----ASPGVVLVHCAMGKSRSVTAIIAYLLWKYPYRFG---KSDPNISAKEAVSRALEWVRETRPIAGPNDGFMRQLEMWW |
8 | 4rkkA | 0.16 | 0.12 | 3.96 | 1.73 | HHsearch | | YIWMPTP--DMSTEGRVQMLPQAVCLLHALLE----------KGHIVYVHSNAGVGRSTAAVCGWLQYVMGW----------------NLRKVQYFLMAKRPAVYIDEEALARAQED- |
9 | 5m43A | 0.21 | 0.19 | 6.18 | 1.09 | PROSPECTOR2 | | HLSIDID--DMEDQDILIHLPKIVRFIDSGLRGIAVA-----SPGVVLVHCAMGKSRSVTAIIAYLLWKYPYRFGKSDPNIS---AKEAVSRALEWVRETRPIAGPNDGFMRQLEMWW |
10 | 4rkkA | 0.16 | 0.12 | 3.95 | 1.27 | SAM | | YIWMPTP--DMSTEGRVQMLPQAVCLLHALLE----------KGHIVYVHSNAGVGRSTAAVCGWLQYVMGW----------------NLRKVQYFLMAKRPAVYIDEEALARAQE-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|