Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | GVFLVFIAVTVFLPVMVFAPQKFAICFTIGCALIIASFFALKGYRTQFAHMTSKERLPITLGFIGSMLGTIYVSMVLHSYVLSVFFSILQVVSLSYYAISYFPGGSAGVKFFT |
1 | 3jbrE | 0.07 | 0.06 | 2.59 | 1.14 | SPARKS-K | | TLFCILVGIVLAMTAVVEYSISAAAISVFSLGFLIMGTICALMFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMACACAAFVLLFLGGISLLLFSLPR--------- |
2 | 6mjpF1 | 0.08 | 0.08 | 3.11 | 1.34 | SP3 | | FVLFLVFLSQKFIRVLADMILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYL-ALITASVAAFNALWLAPWSQDK----EAHLMEQFA |
3 | 4o6mA2 | 0.10 | 0.10 | 3.63 | 0.97 | SPARKS-K | | SFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDLDGVLDRYSDFIIVFSITYPVYWIIGFLAAFASLMIAYTGDKFVAAYFRLLIIFACSVALVIIALLGNFEALRRIVALR |
4 | 5ctgA | 0.13 | 0.12 | 3.97 | 0.83 | FFAS-3D | | -LVLVVCGFALVSHASVFFFDQPLRQQFVGAVSMASLISMFASPLAVMGVVIRSESFYLSLSTFLMSASFALYGLLLRDFFIYFLGLILGAMQLALYAY-------------- |
5 | 5doqB2 | 0.11 | 0.10 | 3.51 | 0.21 | HHpred | | -TSVLYISAVFLTEQARALLRRYALLWSGPTMLSALLIIYQLHNPEHYDNLWNV--AWM--L-VISFLFFVVWLLRQRRFGWAFIALLFQYAFAFYYGISHYPYLL------- |
6 | 5ogeA2 | 0.12 | 0.11 | 3.75 | 0.98 | MUSTER | | PIYTIFKNLTIILIAYGEVLGSVTSMELSSFLLMVLSSVVATWGD-------QSSTTYSMVGALNKLPIALSGLIFFD-NFLSILSIFIGFLSGIIYAVAKQKKQQAQ----- |
7 | 3rkoC | 0.06 | 0.06 | 2.67 | 0.96 | CNFpred | | AGSVDLAGILLKTAAYGLLRFSLPLFPNASEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIH |
8 | 4oo9A | 0.15 | 0.14 | 4.74 | 0.65 | HHsearch-2 | | ACLGLLATLVVFTPVVKSSSRELCYIILAGICLGYLCTF-LIAKPKQIYCY--------LQRIGIGLSPAMYSALVTKTLVIAFILICIQLGILAFVPIYFGSNYKIITMCFS |
9 | 4rfsS | 0.08 | 0.08 | 3.15 | 0.87 | Neff-PPAS | | PFSMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLFYQTPA |
10 | 4k1cA1 | 0.10 | 0.04 | 1.65 | 0.45 | HHsearch | | HTLTLIVS-IIALKPHSVKSSLVIL--LGTTVIISFCADFLVGTIDNVVESTGL----------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|