>PF04142 (304 residues) GMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTEVIKCVICLFLVAQEETP RRFVHALKTQILEQPYDTMKVCIPAMIYIVQNNLFYVAASHLDAATFMITSQLKIFTAAI FTVIILRRSLNRTQWFALAVLFAGVSLVQLQGTKSKEIAGESPFIGFVAVVVACCLSGFA GIYFEKILKGSAPVSLWMRNVQMAVFAIPSSFLAIYMQDAKTVNEYGLLYGFDSIVWLTV LWYGIGGLSVAVCIKYADNIAKNFATSVAIVLSTIGSMFLFDFIPSLTFLLGAALVIFSI FLYS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | GMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTEVIKCVICLFLVAQEETPRRFVHALKTQILEQPYDTMKVCIPAMIYIVQNNLFYVAASHLDAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFAGVSLVQLQGTKSKEIAGESPFIGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFAIPSSFLAIYMQDAKTVNEYGLLYGFDSIVWLTVLWYGIGGLSVAVCIKYADNIAKNFATSVAIVLSTIGSMFLFDFIPSLTFLLGAALVIFSIFLYS | |||||||||||||||||||
1 | 6oh2A | 0.40 | 0.39 | 11.45 | 2.84 | SPARKS-K | ----YCLTVMTLVAAAYTVALRYTRTT-AEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQW---KPAVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSL-WVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYG | |||||||||||||
2 | 6oh2A | 0.42 | 0.40 | 11.89 | 3.97 | FFAS-3D | -----CLTVMTLVAAAYTVALRYTRT-TAEELYFSTTAVCITEVIKLLISVGLLAKETGSGRFKASLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQ---WKPAVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSD-TSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYG | |||||||||||||
3 | 6oh2A | 0.41 | 0.39 | 11.63 | 11.81 | HHpred | ----YCLTVMTLVAAAYTVALRYTRTTA-EELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKSLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWKPA---VVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSS-DTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYG | |||||||||||||
4 | 6oh2A | 0.41 | 0.39 | 11.63 | 2.38 | MUSTER | ----YCLTVMTLVAAAYTVALRYTRTT-AEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQW---KPAVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSS-DTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYG | |||||||||||||
5 | 5y78A | 0.10 | 0.10 | 3.51 | 1.83 | CNFpred | LKVGFYFFLWYFFNFIFNIANKRTLNMW----KYPWVLSTIQLGVGALYCTFLWVLGLRTKPN---------VSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATE-------LTFTWTGFITAMISNVAFVTRNITSKFTMVDF-TLIAQNTYALITIISFFMELPFALLMEGFPPLVSVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLYS | |||||||||||||
6 | 6oh2A | 0.41 | 0.39 | 11.63 | 2.66 | HHsearch-2 | ----YCLTVMTLVAAAYTVALRYTRTTA-EELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFASLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWKPAVVV---AQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSD-TSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYG | |||||||||||||
7 | 6oh2A | 0.40 | 0.39 | 11.54 | 2.99 | Neff-PPAS | ----YCLTVMTLVAAAYTVALRYTRTT-AEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWK---PAVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSS-DTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYG | |||||||||||||
8 | 6oh2A | 0.41 | 0.39 | 11.62 | 3.96 | HHsearch | ----YCLTVMTLVAAAYTVALRYTRTTA-EELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFASLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWKPAVVV---AQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSD-TSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLY- | |||||||||||||
9 | 5y78A | 0.10 | 0.09 | 3.33 | 2.24 | PROSPECTOR2 | SPTGFYFFLWYFFNFIFNIANKRTLNMWK----YPWVLSTIQLGVGALYCTFLWVLGLRT---------KPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATE-------LTFTWTGFITAMISNVAFVTRNITSKFTMKNEKTLIAQNTYALITIISFFMELPFALLMEGFPPLVSAIAGVSKAKLFGSIMFCSLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLYP | |||||||||||||
10 | 6i1rA | 0.28 | 0.26 | 8.05 | 2.62 | SAM | -QWYLVAALLTILTSSQGILTTLSQSNY-----DYATIPFLAELFKLSVSGFFLWKECRTRMT---------KEWRSVRLYVVPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRKLSNIQWMAIVLLAVGTTTSQVKGCGDSDSLFSAPLEGYLLGILSACLSALAGVYTEYLMKKN-NDSLYWQNVQLYTFGVIFNMGWLIYGDFKAGFELGLFNGYSITTWMVVFNLGSTGLLVSWLMKYSDNIVKVYSTSMAMLLTMVLSIYLFSVKATIQLFLGIIICIISLQMYF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |