Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | ILAVVAQILLPLALLVSVYIFLRGHNQPGGGFIAGLITSVALILQYMARGHDWTRQRLPVSYPVVAVCGLAIAVATGLGSWLFGYPFLTSAFGHFHIPLIGEIELASAMLFDLGVYLAVVGATL |
1 | 6cfwF | 0.22 | 0.22 | 6.86 | 3.55 | SPARKS-K | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLG--LSVAFFYNILWHEGPIFNTLLSAGFLPIMNLGVGLKVFTGLV |
2 | 6cfwF | 0.22 | 0.22 | 6.88 | 1.61 | FFAS-3D | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLGLSVAFNILWHEGPIFNSSPGTLLSAGFLPIMNLGVGLKVFTGLV |
3 | 6cfwF | 0.23 | 0.23 | 7.08 | 2.56 | HHpred | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLGL--SVAFFYNILWHEGPSSPGTLSAGFLPIMNLGVGLKVFTGLV |
4 | 6cfwF | 0.22 | 0.22 | 6.86 | 2.82 | MUSTER | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKLYSALEGLGGLVFLGAAMLGL--SVAFFYNILWHEGPIFNSSLSAGFLPIMNLGVGLKVFTGLV |
5 | 3rkoB | 0.13 | 0.11 | 3.93 | 0.99 | CNFpred | | PTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALV---QTDIKRVLAYSTMSQIGYMFLALGVQAWDAA------------IFHLMTHAFFKALLFLASGSVIL |
6 | 6cfwF | 0.23 | 0.23 | 7.08 | 5.36 | HHsearch-2 | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLGL--SVAFFYNILWHEGPSSPGTLSAGFLPIMNLGVGLKVFTGLV |
7 | 6cfwF | 0.23 | 0.23 | 7.08 | 2.72 | Neff-PPAS | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLGL--SVAFFYNILWHFNSSPGTLLSAGFLPIMNLGVGLKVFTGLV |
8 | 6cfwF | 0.23 | 0.23 | 7.07 | 5.85 | HHsearch | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLGL--SVAFFYNILWHEGPSSPGTLSAGFLPIMNLGVGLKVFTGL- |
9 | 6cfwF | 0.22 | 0.22 | 6.86 | 1.44 | PROSPECTOR2 | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLG--LSVAFFYNILWHEGPIFNSSLSAGFLPIMNLGVGLKVFTGLV |
10 | 6cfwF | 0.23 | 0.23 | 7.08 | 1.21 | SAM | | IVRTNARALIPFIGIFGAYIVTHGHLTPGGGFQGGATIAGAGVLFLIAFGVKAAKEKINKNYSALEGLGGLVFLGAAMLGL--SVAFFYNILWHEGPSSPGTLSAGFLPIMNLGVGLKVFTGLV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|