>PF04007 (340 residues) LKIWIDITNAPHVRFFRDVITYFQEEGEDVIITARKFGDIHRLMKLFGFEFTSIGKHGVT LSEKLIESTKRAYNLSKFIAEQRPDVGLSKHSIELPRVTFGLGIPSVYVLDNEHALAANK LTLPLCDNIIMPEVIDLWDIMKTGADPNRIRRYRGTSEIIHFQNFEYNENIFEDLNLKLE REKTILMRPEPSLASYLDADCHESVLTPIVEVLKDYANILIIPRFREQAEIFEGYDNVTI IKPPVDTFSLMKRCDLVIGAGGTMNREAALLGTPVISCYPGKPLSVDRFYIDNGLMYRST DVDEIVNTALRLLVSKREQKKLRTDDLFRIIVDMVYEAAE |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LKIWIDITNAPHVRFFRDVITYFQEEGEDVIITARKFGDIHRLMKLFGFEFTSIGKHGVTLSEKLIESTKRAYNLSKFIAEQRPDVGLSKHSIELPRVTFGLGIPSVYVLDNEHALAANKLTLPLCDNIIMPEVIDLWDIMKTGADPNRIRRYRGTSEIIHFQNFEYNENIFEDLNLKLEREKTILMRPEPSLASYLDADCHESVLTPIVEVLKDYANILIIPRFREQAEIFEGYDNVTIIKPPVDTFSLMKRCDLVIGAGGTMNREAALLGTPVISCYPGKPLSVDRFYIDNGLMYRSTDVDEIVNTALRLLVSKREQKKLRTDDLFRIIVDMVYEAAE | |||||||||||||||||||
1 | 3beoA | 0.18 | 0.17 | 5.65 | 1.49 | SPARKS-K | LKVMTIFGTRPEAIKMAPLVLELQKHKIESIVTVQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDTIASLAAFYNQIPVGHVEAPYPEEMNRQLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNIDALKTTVKETYSHPVLEKL----GNNRLVLMTAHRRENLGE----PMRNMFRAIKRLVDDVQVVYPVHNPVVRETANDIGRIHLIEPVIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTT---ERPEGIEAGTLKLGTDEETIFSLADELLSDKEAHDKMSKARASERIVEAILKHFN | |||||||||||||
2 | 3dzcA | 0.15 | 0.15 | 4.94 | 2.27 | FFAS-3D | MKVLIVFGTRPEAIKMAPLVQQLCQDNRKVCVTGQHREMLDQVLELFSITPDFIMEPGQTLNGVTSKILL---GMQQVLSSEQPDVVLVHGDTAASLAAYYQQIPVGHVEAGLREEGNRKLTAALTQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDALLTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKVSNIVLIEPQQPFVYLMDRAHIILTDSGGIQEEAPSLGKPVLVMRETTER---PEAVAAGTVKLVGNQQQICDALSLLLTDPQAYQAMSQAKACQRIADILAK--- | |||||||||||||
3 | 3beoA | 0.20 | 0.19 | 6.11 | 1.28 | HHpred | LKVMTIFGTRPEAIKMAPLVLELQKHPSIVTVTAQHRQMLDQVLSIFGITFDNIMKDRQTLIDITTRG---LEGLDKVMKEAKPDIVLVHGDTIASLAAFYNQIPVGHVWDSPYPEEMNRLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNIDALKTTVKETYSHPVLE--KLG-N-NRLVLM-------TAHRRENLGEPMRNMFRAIKRDVQVVYHMNPVVRETANDIYGRIHLIE-PLDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTT-ERPE--GIEAGTLKLATDEETIFSLADELLSDKEHDKMSKASNPSERIVEAILKHFN | |||||||||||||
4 | 5dldA | 0.15 | 0.14 | 4.88 | 1.57 | MUSTER | KKILLVFGTRPEAIKMAPLVRALKARDVDAKVCVQHRQMLDQVLSLFDIEPDYDLDLMRQGQTLSDVTTGILHAIGAVFDDLRPDIVLVHGDLAVSLAAFYRYLPIGHVEAPWPEELNRRVTDAVSSWHFAPTGQARDNLLSEGVPVGSVVMNTVIDALHDVKHMALSREVAARFPFLDPTARMVLITGHRRESFGEPFRNFCEALRTLAHRYRD-AQFVYPLHLEPALALLGGEANIYLIEPQLAFVYLMSRSHFIITDSGGIQEEGPALGKPVLVTRDTTER---PEAIRAGTARLGTDPELIVREASRLFDSASAYDEMARGHASERIVHALMHAEL | |||||||||||||
5 | 3beoA | 0.18 | 0.17 | 5.65 | 1.99 | CNFpred | LKVMTIFGTRPEAIKMAPLVLELQKHKIESIVTVTARQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDFIASLAAFYNQIPVGHVEAGLRTEMNRQLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKYSHPVLEKL----GNNRLVLMTAHRRENLGE----PMRNMFRAIKRLVEDVQVVYPVHMN-ANDILGDYGRIHLIEPLDDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRD---TTERPEGIEAGTLKLAGDEETIFSLADELLSDKEAHDKM-DGRASERIVEAILKHFN | |||||||||||||
6 | 6d9tA | 0.13 | 0.13 | 4.37 | 0.70 | HHsearch-2 | MKIGITCYMGGSGIIATELGIKLAERGHEVHFITSNIPFRIR-KPLPNMIFHQVEVNQYAVFQYPPYDITLSTKIAEVIKEYDLDLLHMHYAVPCGILAREKDIKIMTTLHGTDITGAIKFGIEKSDIVTSVSKSLAQETHEIETNKEIIPIYNFVRENEFPT--KHNTALKSQFGIAPD-EKVLIH-VSNFR----QVKRI-DTIIETFAKVREPSKLILLGDGPE-LVPMRELEDVLFLGKQDCVSEFYQLSDLVLLLSGLTLLEAMKTGVVPIGSNAGG----IKEVIETGFVVDVGDCDSASDYAIRLLEDKVNKDIAESELITDQYEYYYQKMLN | |||||||||||||
7 | 5dldA | 0.15 | 0.15 | 4.96 | 2.14 | Neff-PPAS | KKILLVFGTRPEAIKMAPLVRALKARADKVCVTAQHRQMLDQVLSLFDIEPDYDLDLMRQGQTLSDVTTGILHAIGAVFDDLRPDIVLVHGDLAVSLAAFYRYLPIGHVEAPWPEELNRRVTDAVSSWHFAPTGQARDNLLSEGVPVGSVVMTGNIDALHDVKHMLERREVAARFPFLDPTARMVLITGHRRESFGEPFRNFCEALRTLAHRYRDAQFVYPLHLNPNVREPALALANIYLIEPQLAFVYLMSRSHFIITDSGGIQEEGPALGKPVLVTRDT---TERPEAIRAGTARLVTDPELIVREASRLFDSASAYDEMARGHASERIVHALMHAEL | |||||||||||||
8 | 6d9tA | 0.13 | 0.13 | 4.37 | 1.11 | HHsearch | MKIGITCYMGGSGIIATELGIKLAERGHEVHFITSNIPFRIR-KPLPNMIFHQVEVNQYAVFQYPPYDITLSTKIAEVIKEYDLDLLHMHYAVPCGILAREKDIKIMTTLHGTDITGAIKFGIEKSDIVTSVSKSLAQETHEIETNKEIIPIYNFVRENEFPTK--HNTALKSQFGIAPD-EKVLIH-VSNFR----QVKRI-DTIIETFAKVREPSKLILLGDGPE-LVPMRELEDVLFLGKQDCVSEFYQLSDLVLLLSGLTLLEAMKTGVVPIGSNAGG----IKEVIETGFVVDVGDCDSASDYAIRLLEDKVNKLIAERELITDQYEYYYQKML- | |||||||||||||
9 | 3beoA | 0.18 | 0.17 | 5.58 | 2.07 | PROSPECTOR2 | LKVMTIFGTRPEAIKMAPLVLELQKHKIESIVTVTAQHRLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLEGLDKVMKEAKPDIVLVHGDTIASLAAFYNQIPVGHVEAGLREEMNRQLTGVMADLHFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKLGN--NRLVLMTAHRREN----LGEPMRNMFRAIKRLVDDVQVVYPVHMNPVNDILGDYGRIHLIEPLDDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTTER---PEGIEAGTLKLGTDEETIFSLADELLSDKEAHDPYGDGRASERIVEAILKHFK | |||||||||||||
10 | 1rzuB | 0.10 | 0.09 | 3.48 | 2.51 | SAM | MNVLSVSSTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDERLDLLILDAPAYERS-NWKRFAALSLAAARIGAGWRPDMVHAHDWQAPVYMRYAPEIPSLLTIHNI---SFLKGGLQTATALSTVSPSYAEEILTAGLAHVLHGIVNGIDADVWNPATDHKKAVAEHFRIDDG-SPLFCVRLTWQK-------GI-DLMAEAVDEIVSGGRLVVLGAGDVLEGALLAAGRVVAIGYNPLSHLMQAGCDAIIIPSGLTQLYALRYGCIPVVARTGG----ADTVIDTGVQFSPVTLDGLKQAIRRTVRDPK--SDVSWEKSAGLYAALYSQ--- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |