Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MAKAFITGGIICTIGQFIYNYCELQNLSKDECSGWTSMLLVLLSVILTGINLYPKIAKWGGAGALVPITGFANSVASPAIEYKKEGQVFGIGCKIFTIAGPVILYGIFTSWILGFV |
1 | 5sv9A | 0.10 | 0.09 | 3.22 | 0.96 | SPARKS-K | | VIPSTVDTYFNNLLPAIAFAQDMFDRTDNSYGVNEVLLSSAMAGIVFGVLA--------GQPLCIVGVTGPISIFNYTVYEIIKPLN-----TSYFGFMFWICLWSMIFHLLLAFT |
2 | 3r9mA2 | 0.13 | 0.12 | 4.16 | 0.69 | FFAS-3D | | -----LIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASGEAIRSLQEAEKLYAKAEALCKEPTVKPSGHLFFRKLGNLVKNTLEKC------ |
3 | 5nikJ | 0.09 | 0.04 | 1.66 | 0.26 | HHpred | | -VLVCLVGGALGITLSLLIAFLQLFGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAA--------------------------------------------------------- |
4 | 5x5yG1 | 0.10 | 0.09 | 3.21 | 0.82 | MUSTER | | VFVAILAVLGVILGLALLFAFIDELNDISASYGIGDALRFIFLTAPRRAY-DMLPMAAL-----------IGCLVGLGTLASNSELTIMGV--SLSRIVWAVMKPMLVLMLAGILV |
5 | 3rkoB | 0.10 | 0.09 | 3.22 | 0.88 | CNFpred | | PVSALIHAATMVTAGVYLIARTHGL-FLMTPEVLHLVGIVGAVTLLLAGFAAQTDIKRVL---AYSTMSQIGYMFLALGVQ--------AWDAAIFHLMTHAFFKALLFLASGSVI |
6 | 2yvxA | 0.12 | 0.12 | 4.22 | 0.61 | HHsearch-2 | | LVGIVTVDDVLDVLAEATEDIHKLGAVDVPDAGPWLVIL--ILTGMVTILQGFESVLAVTALAFYVPVLGTGNTSATLIIRALATRDLD--LRDWRRVFLKEMGVGLLLGLTLSFL |
7 | 5kbwA | 0.08 | 0.08 | 3.09 | 0.78 | Neff-PPAS | | LIVSFLLGPGVGMFVVLVKDILFFL-MKSGDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFEAFELYLKFFPFILAFNLVKFGIDSVV |
8 | 2iu5A2 | 0.12 | 0.04 | 1.53 | 0.32 | HHsearch | | FICRYNAAAICAITRESIIRG-N---SLEKLYSQIVNLLLAQI-------KIFE-------------------------------------------------------------- |
9 | 6mjpG1 | 0.14 | 0.13 | 4.41 | 0.91 | SP3 | | IVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDVEMFFPMAALLGA-----LIGLGALASSSELVVMQAAGF-----SKLDIGLSVLKTAIPLMIIVTLL |
10 | 5aymA1 | 0.08 | 0.08 | 3.09 | 0.58 | PROSPECTOR2 | | LETQLLLGRLLTRSGDQAWDFVVIFPGKLQVAAFKWGVWLQFFAILAGMVFFGMLDGLVRAGGRESWLSGVMASLGSQITDISVGNDLAPSLVAIGLWNLVSFVPEYFLLRNVIVL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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