>PF03845 (326 residues) IVPIELSITLLSFIIGVGILTIPRSLAQELESPDGWISLALSGVIVMIFCYLYTRLQRNF VGMNILEYLKQGSIGKWGAKILAILFIIYFITLCSFEARILTVVVKMYLLDQTPSEVVAG CILLLTTYAVHKGVQGVIHLNLIFMPIIMLVIMGVLSFNIPEFDYDALRPVFSEGVSPVL LTLKNTLLSFLGIESIFFFMAYMKKSDLRSLPLNISLGIITILYILVTTFAYSIFSLDAT KFITFPTIELAKEIEVPGAFFERFESLMMTVWIMTIFNTMTMCHFFAYSIFKKEFLPAKK NEFKKTKAFLPSIIQLLVFIITFIPN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IVPIELSITLLSFIIGVGILTIPRSLAQELESPDGWISLALSGVIVMIFCYLYTRLQRNFVGMNILEYLKQGSIGKWGAKILAILFIIYFITLCSFEARILTVVVKMYLLDQTPSEVVAGCILLLTTYAVHKGVQGVIHLNLIFMPIIMLVIMGVLSFNIPEFDYDALRPVFSEGVSPVLLTLKNTLLSFLGIESIFFFMAYMKKSDLRSLPLNISLGIITILYILVTTFAYSIFSLDATKFITFPTIELAKEIEVPGAFFERFESLMMTVWIMTIFNTMTMCHFFAYSIFKKEFLPAKKNEFKKTKAFLPSIIQLLVFIITFIPN | |||||||||||||||||||
1 | 3gi9C | 0.16 | 0.15 | 5.12 | 2.45 | SPARKS-K | LSLWEAVSMAVGVMIGASIFSIFGVGAKIAG-RNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDIITGALSILLWMSYVISIALFAKGFAGYFLPLIAPINNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPAVSGMIFASAIFFLSYMGFGVITNASEHIENKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASNALAVAAKPFLG-----NLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVEGLYITSALGVLFALLFN | |||||||||||||
2 | 5oqtA | 0.16 | 0.16 | 5.29 | 2.39 | FFAS-3D | LGAFDLTMLGIGAIIGTGIFVLTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGELPKALPAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQRMPIGIIVSLLVCTLLYIAVSLVLTGIVPYEQLNVKN-PVAFALNYIHQD-----WVAGFISLGAIAGITTVLLVMMYGQTRLFYAISRDRISPTRQVPYVNTWLTGAAVAVFAGIIP- | |||||||||||||
3 | 6f2gA | 0.11 | 0.10 | 3.79 | 2.49 | HHpred | VSGITALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGMMIY-LEKVYGRWLGFLVGWAQMVIYYANIAALAIIFATQFVNLFASDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYGGGVRLVPFSHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLF--EGIGS---KLVTIGILISVFGGINGYIISGLRVPYALATQ-KMLPFARININGGLVMLGIAIVMILTGQ | |||||||||||||
4 | 3gi9C | 0.14 | 0.14 | 4.79 | 1.56 | MUSTER | LSLWEAVSMAVGVMIGASIFSIFGVGAKIAG-RNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDIITGALSILLWMSYVISIALFAKGFAGYFLPLIAPINNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKP----FLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGEERKVWFKSTEGLYITSALGVLFALLFN | |||||||||||||
5 | 3ob6A | 0.13 | 0.13 | 4.37 | 2.04 | CNFpred | VGLIPVTLMVSGNIMGSGVFLLPANLASTG--GIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFF-DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLPPIFARVGTPVAGLIIVGILMTIFQLS | |||||||||||||
6 | 6f2gA | 0.11 | 0.11 | 3.96 | 2.31 | HHsearch-2 | VSGITALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGMMIY-LEKVYGRWLGFLVGWAQMVIYPANIAALAIIFATQFVNLFLSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYGGGVRLVPFSHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLF--EGIGS---KLVTIGILISVFGGINGYIISGLRVPYALATQ-KMLPFAKLPINGGLVMLGIAIVMILTGQ | |||||||||||||
7 | 5oqtA | 0.16 | 0.16 | 5.29 | 2.18 | Neff-PPAS | LGAFDLTMLGIGAIIGTGIFVLTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGETFIDLPAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTAAEEVRNQRDMPIGIIVSLLVCTLLYIAVSLVLTGIVPYEQLN-VKNPVAFALNYIHQ-----DWVAGFISLGAIAGITTVLLVMMYGQTRLFYAISRDGLLPKVQVPYVNTWLTGAAVAVFAGIIPL | |||||||||||||
8 | 6f2gA | 0.11 | 0.11 | 3.87 | 3.52 | HHsearch | VSGITALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGMMIY-LEKVYGRWLGFLVGWAQMVIYPANIAALAIIFATQFVNLFLSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYGGGVRLVPFSHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLF--EGIGSK---LVTIGILISVFGGINGYIISGLRVPYALATQ-KMLPFARININGGLVMLGIAIVMILTG- | |||||||||||||
9 | 5oqtA | 0.16 | 0.16 | 5.29 | 2.38 | PROSPECTOR2 | LGAFDLTMLGIGAIIGTGIFVLTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGELPKALPAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQDMPIGIIVSLLVCTLLYIAVSLVLTGIVPYEQL-NVKNPVAFALNYIHQ-----DWVAGFISLGAIAGITTVLLVMMYGQTRLFYAISDLKRAFRVPFVPVVPILAVLFCGYLVLQLPN | |||||||||||||
10 | 5oqtA | 0.18 | 0.17 | 5.61 | 2.64 | SAM | -GAFDLTMLGIGAIIGTGIFVLTGVAAEHAG-PALVLSFILSGLACVFAALCYAEFASTVPVSSAYTY-SYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGELPKALTAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQDMPIGIIVSLLVCTLLYIAVSLVLTGIVPYEQLN-VKNPVAFALNYIHQD--WVAGFISLGA---IAGITTVLLVMMYGQTRLFYAISRD-GLLPFARISPVNTWLTGAAVAVFAGIIP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |