Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LTGCATTVPQAIREPPPNDPVVAEVRRDPAAYAGQRVRWGGTVASVENRRDETRLEIVARELGSNGRPRETDRSQGRFIARVQGFLDPAVYTSGRQVTVSGTLEQTVTRPIGQYSYTFPLVRADSVYLWERMPDRRNYYYYDPFWPYDPFW |
1 | 1l0wA1 | 0.11 | 0.07 | 2.62 | 1.09 | SPARKS-K | | ---------------MRRTHYAGSL---RETHVGEEVVLEGWVNRRRDLGGLIFLDLRDR--------------EGLVQLVAPAYATAERVRPEWVVRAKGLVRLR-PEPNPRLATGRVEVELSALEVLAE-------------------- |
2 | 4glvB | 0.17 | 0.11 | 3.69 | 1.09 | CNFpred | | ---------------PKKTHWTAEIT---PNLHGSEVVVAGWVAHLGDYGRVKIVKVSDRE------------GGAAVPVYLERFKVFAELSREDVVVIKGIVEATTVTRW----DTGVEIFPSEIWILNKA------------------- |
3 | 1sr3A | 0.22 | 0.15 | 4.80 | 1.02 | HHsearch | | -----------LRSNIDLFYTPGEILYGKREEVGQRLRVGGMVMPVQRDPNSVTFTIY----D--A--------EGSVDVSYEGIL-PDLFREGQGVVVQGELEKGN------------HILAKEV--LAKHDENYTPPEVKAM------- |
4 | 5groA | 0.07 | 0.05 | 1.90 | 1.07 | SPARKS-K | | -----------------RSHFCTEI---SEKDVGKIVKVAGWCNTYRDHGGVVFIDLRDK--------------SGLVQLVCDAYEKALEVRSEFVLVAKGKVRLRGALENPKLKTGKIEIVLEELIIENKS------------------- |
5 | 6od8A1 | 0.09 | 0.07 | 2.50 | 0.64 | FFAS-3D | | ------PMVQSTTYKSRTHIPVSEL--SRPELVDKTVLIRARVSTTRKKGKMAFMVLRD--------------GSDSVQAMAAVEGDVGQIATESIVDVEATVCKVEQPSHSDIE-----LKVKKIHTVTESLR----------------- |
6 | 4joiD | 0.17 | 0.11 | 3.50 | 0.39 | HHpred | | ------------LPKPGTYYLPWEVSAG-QVPDGSTLRTFGRLCLYDMIQSRVTLMAQH-------------GSDQHQVLVCTKLVEPFHAQVGSLYIVLGELQHQQD--------RGSVVKARVLTCVE--------------------- |
7 | 1wydB1 | 0.18 | 0.11 | 3.66 | 0.85 | MUSTER | | ---------------MYRSHFIADVT---PEYDGKEVIWAGWVHLLRDLGGKKFIILRD--------------KTGLGQVVVDKFGISQELTQESVIQVRGIVKADKRAP-RG-----IELHAEEITL-KAK------------------- |
8 | 1wydA | 0.17 | 0.11 | 3.47 | 1.09 | CNFpred | | ---------------MYRSHFIADVT---PEYDGKEVIWAGWVHLLRDLGGKKFIILRDK--------------TGLGQVVVDKFGISQELTQESVIQVRGIVKADKRA------PRGIELHAEEITLLS--------------------- |
9 | 1lm0A | 0.20 | 0.12 | 3.83 | 0.83 | HHsearch-2 | | -------------SNLNLFYTPSEIVNGKTDEAGQRIRVGGMVTVMVRDPNHVQFAVH----DS---------LGGEILVTYDD-LLPDLFREGQGIVAQGVLGED--G----------KLAATEVLA--KHD------------------ |
10 | 4o2dA1 | 0.17 | 0.11 | 3.70 | 0.89 | Neff-PPAS | | ---------------VLRTHAAGSLR---PADAGQTVTLAGWVARRRDHGGVIFIDLRDA--------------SGVSQVVFRVLAAAHRLRAEFCVAVTGVVEVRPEGNENPEIPTGIEVNATELTVLGES------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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