>PF03842 (538 residues) MVSVIDGIKQFYSMALVIFSVVIVTALMFTDNTKLAKDAHPVAALVIMWLGILWMSMVEG GQCSMVGLPPIDRDLYKESHPITYKICSLGHKGNNLDRYLMGRQFMVIFINFTINLCGAP LEGAEVLGLPEILTDIFLGSGIAMVLTVVTIGQLTAQVNASHCMLDYINTHFMTFTLYVT LVIEATGVMHSCYLIRDMFYHAAGKPVETNEPPRSAVQNLFHWGRVVFSLGVLCFALAVT IEALFNGKTTMWEFIPNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKAERGDHPFARK TCELLFKGKGRNLPGFMVGRQMTVTLCFFIIARVTTLDIEVGVDDNIFGVSDGIQEFFNL GFLGAIITTILASIAWQLVASAFPIAFLSNPIVYIVLRIVLLIEATGICAGAWFLGMIHK KVAGFQLDEVYVGTAEERAAGMKPDHSIHAGREFTMGTNVLNDRKNWEETIANLSAKETF SVRRERMLKNIRELRAMAEEASSPEEKATFETAPTMETKALNKLNEEQEKEATLQKDS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MVSVIDGIKQFYSMALVIFSVVIVTALMFTDNTKLAKDAHPVAALVIMWLGILWMSMVEGGQCSMVGLPPIDRDLYKESHPITYKICSLGHKGNNLDRYLMGRQFMVIFINFTINLCGAPLEGAEVLGLPEILTDIFLGSGIAMVLTVVTIGQLTAQVNASHCMLDYINTHFMTFTLYVTLVIEATGVMHSCYLIRDMFYHAAGKPVETNEPPRSAVQNLFHWGRVVFSLGVLCFALAVTIEALFNGKTTMWEFIPNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKAERGDHPFARKTCELLFKGKGRNLPGFMVGRQMTVTLCFFIIARVTTLDIEVGVDDNIFGVSDGIQEFFNLGFLGAIITTILASIAWQLVASAFPIAFLSNPIVYIVLRIVLLIEATGICAGAWFLGMIHKKVAGFQLDEVYVGTAEERAAGMKPDHSIHAGREFTMGTNVLNDRKNWEETIANLSAKETFSVRRERMLKNIRELRAMAEEASSPEEKATFETAPTMETKALNKLNEEQEKEATLQKDS | |||||||||||||||||||
1 | 5t77A | 0.08 | 0.06 | 2.50 | 1.13 | SPARKS-K | FSSILFSIATFFSRILGLFRDVLFAKYFGVS------YELDAYFIAIMFPFFLRKVFGEGAM--------------------SSAFVPLYSEKSEEKDKFLSSVINGFSLIILALVILSYFFPELIAGSSHETKILAKKLLLITSIYFIFLWAISYSILNTNFWPALTPSISNITIIIGTFLSTKYGIISPTIGFLIGSILMFFSIIKIKHKYYFTIKHFPHFLKLFFPTFMTMVVSQ-----------------------INTVVDMNVVSSISYLQYASRFYLLPYGLFA--VSVSTVVLSKISNDRKNFNYHLNDALKTTLFFTIPSMVGLIFLEHGAFTS----KDTLITSKILIAYTLGLPFYGIYSTISRSYHAAATIVSLSNIILDIIFGLKYPIGVALATSIAGIIGVLYLLFSVKTFP--------------------------------------------------IKDFLKISLNSLIMLFVIYLTDFTDNEF---WFLIQILIGILVYLIFSSIFRDLIRRFL-- | |||||||||||||
2 | 6h7wQ | 0.09 | 0.08 | 3.15 | 1.39 | FFAS-3D | LADLYELVRLYLMITVGTAYMSILMKDMMDMSRGVQ---HPVRGLFLRYYLSFILTNFVEMNKLWVRLQHVDLPTYRDSILGPLLEQIVQCRDILAQEYLLEVEYHLHTLDQFLGAVSRLNPHVNVKAIVIGMMNRLSDYAELYDIFFDQVQHLVQA------QHLPIQDTIALCCSLANLSLNIYPLDYVDGILAYALAKVKEHANSADLHSQPAQQSLLSLLQSPLRFTALTYVSLFIVRTLLKNQTLIST------PAHLENVLEILKVLIEEQGWLARLVHLIHSDDNDTQFRLLQMTRKAYAEGNERIRTTTPP---LITAGLKLARRFKAREHYDDNWSS---QSSSLFKFLHSAISTLYTRVADLCLRLFCSCGQVADMTEFEEVAYEFFAQAFTVYEESISDSKAQFQAVCVIASALHRTRNFGRENYDTLITK----------CAQHASKLLRKPDQCRAVYLASHEDTELYRDGKRVLECLQRALRVADSCMETATSIEL-FVEILDRKYLNGLIELIHSNLAGNQQD | |||||||||||||
3 | 5ifeC | 0.10 | 0.10 | 3.74 | 1.00 | MUSTER | IPSLLPFLKAVCSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLQKVRTISALA--AALAAATPYGIESFDSVLKPLWKGIRQH-RGKGLAAFLKAIGYLIPLAEYANYYTREVMLIIREFQSPEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIV--DDLKDEAEQYRKMVMETIEKIMGNLHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQDLISRTAVVMKTCQEEKLMGHLGVVLYEPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI-LK--EKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAKAIRATVNTFGYIAKAIGPHDVLA-TLQNRVCTTVAIAIVAETCSPFTVEYRVPELNVQNGVLKSLSFLFE--YIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYET | |||||||||||||
4 | 3rkoC | 0.11 | 0.08 | 2.83 | 1.71 | CNFpred | IHLAIDGLSLLMVVLTGLLGVLAVLCSWK-----EIEKYQGFFHLNLMWILGGVIGVFLAID---------------------------------MFLFFFFWEMMLVPMYFLIALWGHKASDGK--TRITAATKFFIYTQASGLVMLIAILALVFVHYVWTFNYEELL-YLLMLGFFIAFAVKMPVVPLHGWLPDAHSQA-------------------PTAGSVDLAGILLKTAAYGLLRFSLP---------LFPNASAEFAPIAMWLGVIGIFYGAWMAFA------------------------QTDIKRLIAYTSVSHMGFVLIAIYTG----------SQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDRMMGGLWKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSF------------------------------------------QVVPVITVIST--FGLVFASVYSLAMLHRAYFGKAKSQIA-SLRELFMILLLVVLLVLLGFYPQPILDTSHSA | |||||||||||||
5 | 3wajA1 | 0.10 | 0.09 | 3.18 | 1.21 | Neff-PPAS | -------------SVLVIAALISVKLRILNPWNSVFTWTVRLGGNDPWYYYRLIENTIHNFRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGITSGESLRAVLAFIPAIGGVLAILPVYLPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLTARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVN-------------ADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFLKRR----------SFPEMALLIWAIAMFIALWGQNRFAYYFAAVSAVYSALALSVVFDKLHFRVAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGVISWWDYGHWIEAVAHRMPIANPFQA-------------------------------- | |||||||||||||
6 | 5ifeC | 0.09 | 0.09 | 3.28 | 1.38 | PROSPECTOR2 | EFGAGPLFNQILPLLERHLLVKVIDRILYKLDDLVRPYVHKILVVIEVEGREIISNLAKAAGLATMDIDNMDEYVRNLGIPSLLPFLKAVCKSKKSWQARHTRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLI-PLMDAEYANYYTREVMLILIKIVLKVVKQCGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQGAADIDHKLEEQLIDGILYAFQYLPQICGTVLWRLNNKMKTCQEEKLMGHLGVVLYEYLGEE-------YPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCI---DLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAATVNTFGYIAKAIGPHDVLATLQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQHMSLGVYGFGCEDSLNHLLNYVWPN----VFETSPHVIQAVMGALEGLRVAIRKVRDVYWKIYNSIYIG | |||||||||||||
7 | 6cc4A | 0.09 | 0.09 | 3.22 | 1.10 | SPARKS-K | --------------------DLEDNWETLNDNLKVIEKANAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDEGKYIQKYLFSRVLGFARDAIVARIFGAG----------MATDAFFVAFKLPNLLRRIFFSQAFVPILAEYKSTRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADTA--------DKFALTSQLLKITF-PYILLISLASLVGAILNTWNRF--SIPAFAPTLLNISMIGFALFAAPVLALAWAVTVGHDAGAMRQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSSGNH------DEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYAFDALMTQRALIAYSVGIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLGLAACLNASLLYWQLRKFTPQPGWMAFLLRLVVAVLVMSGVLLGMWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKE | |||||||||||||
8 | 6c96A | 0.09 | 0.09 | 3.22 | 1.29 | FFAS-3D | ----TYVHATLELFALMVVVFELCMKLRWLGFHTFVRHKRTMVKTSVLVVQFIEAIVVLVRCIFLVDCRYCGG--------VRRNLRQIFQSLPPFDILLLLLFFMIIFAILGFYLFSTNPSDPYFSTLENSIVNLFVLLTIMNLLLAVVFDTFNDIEKHKFKSLLLHKRTAIQHAYGLEGLMRFYKPRMSARERFLTFKALNQSNTPLLSRTAFLIFKGINAFQYFMYLVVAVNGVWILVETFMLKGGNFTSKHVPWSYLVFLTIYGVELFM----KVAGLGP----VEYLSSGWAFAFLGLLALTLNMEPFYFIVVLRPLQLLRLFKLKKRYRNV---------LDTMFELLPRMASLGLTLLTFYYSFAIVGMEFFNGRLLNNFDNILNSFVTLFELTRLYFMTFYIVTMVVMTIIVAFI--------LEAFVFRMNYSRKSGIVIE---------KEMSKEELMAVLELYREERGTSSDVTRLLDTLSQMEKYQQNSLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQK-- | |||||||||||||
9 | 5y50A | 0.08 | 0.06 | 2.47 | 1.67 | CNFpred | TKKLSYIAGAMIAVNSSMYVLQVISIMMVGHL---GELFLSSTAIAVSFCSVTGFSVVFGLASAL---------------ETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWYIGDILSLIGQDAMVAGKFATWLIPALFGYATLQPLVRFFQAQSLPLVMSSVSSLCIHIVLCWSLVSLGAAIAIGVSYWLNVTVLGSRATISMSLFEGMGEFFRFGIPSASMICLEWWSFEFLVLLSGILPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANELGAG-----NPKQARMAVYTAM--------VITGVESIMVGAIVFGARFGYLFS----SETEVVDYVKSMAPLLSLSVIFDALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAFMRGRGLWIGITVGSCVQAV-----------------------------------------LLGLIVILT--------NWKKQARKARERVM------------------------------------------ | |||||||||||||
10 | 4djiA | 0.13 | 0.11 | 3.94 | 1.11 | Neff-PPAS | QLTLLGFFAITASMVMAVYEYPTFATS------------GFSLVFFLLLGGILWFIPVGLCAAEMATVDGW-----EEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHS----------------GAIEMDSKTFFDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN---------PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIV-----------GPSRGMYVTAQKNVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMNDK----------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |