>PF03812 (304 residues) ILKAIERIPGGLMVVPLLLGAIINTFFPQALQIGGFTTALFKQGAMPLIGLFLLCNGAQI TLREAGVSLSKGVALTAVKFFIGAALGWVVGKFMGPTGLLGLSSLAIIAAVTNSNGGLYT ALASQYGDPTDVGAIAILSINDGPFLTMVAMGATGLANIPFIALVAVVIPILVGMILGNL DEEWKKFLAPGQKLLIPFFAFPLGAALDFRTILKAGFPGILLGVLTVVLTGLGGYLTIKY IFRENKGVGAAIGTTAGNAVATPAAVAAVDPTLEPLVAAATAQVAASVIITAILCPLLVS YLDK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ILKAIERIPGGLMVVPLLLGAIINTFFPQALQIGGFTTALFKQGAMPLIGLFLLCNGAQITLREAGVSLSKGVALTAVKFFIGAALGWVVGKFMGPTGLLGLSSLAIIAAVTNSNGGLYTALASQYGDPTDVGAIAILSINDGPFLTMVAMGATGLANIPFIALVAVVIPILVGMILGNLDEEWKKFLAPGQKLLIPFFAFPLGAALDFRTILKAGFPGILLGVLTVVLTGLGGYLTIKYIFRENKGVGAAIGTTAGNAVATPAAVAAVDPTLEPLVAAATAQVAASVIITAILCPLLVSYLDK | |||||||||||||||||||
1 | 4bwzA | 0.17 | 0.16 | 5.29 | 2.20 | SPARKS-K | QPVVIGEVLAGVLVGPA-----------LLGLVHEG--EILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFETLPALFLGTALVAVLSRPYSRIILGAAVIDDVLGLIVLACVNGSPLGFALALGVGMAALAASIG--LAPIVGAFLGGMLLSEVREKYEEPIFAIESFLAPIFFAMVGVRLELSALPVVLVAGTVVTVIAILGKVLGGFLGALTQGVRSALTVGCMAPRG----EVGLIVAALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIA | |||||||||||||
2 | 4bwzA | 0.17 | 0.16 | 5.32 | 1.86 | FFAS-3D | ---IFKRLNQPVVIGEVLAGVLVG---PALLGLVHEGEILEFLAELGAV-FLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFE---TLPALFLGTALVATSVGITARVLQELGVLDDVLGLIVLACVGSPLGFALALGVGMAALAASIGLAPIVGAFLGGMLLSEVREKYEEPIFAIESFLAPIFFAMVGVRLELSALASPVVLVAGTVVTVIAILGKVLGGFLGAL-TQGVRSALTVGCGMAPRGEVGLIVAALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIA | |||||||||||||
3 | 4bwzA | 0.19 | 0.18 | 5.84 | 2.80 | HHpred | IFKR-LNQPV--VIGEVLAGVLVGPALLGLVHE----GEILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFEDVLGLIVLACVNGVAETGVGVFVGLAVFLSTLIARLPLERLPV-GSPLGFALGVGMAALAA--SIGLAPIVGAFLGGMLLSEVREKYEEPIFAIESFLAPIFFAMVGVRLELSALASPLVAGTVVTVIAILGKVLGGFLGALTQGVRSALVGCGMAPRGEVGLIV----AALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIA | |||||||||||||
4 | 3zuxA | 0.18 | 0.17 | 5.48 | 1.59 | MUSTER | ILSKISSFIGKTFSLWAALFAAAAFFAPDTF-------KWAGPYIPWLLGIIMFGMGLTLKFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLP-AVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLALEIQAAGMLMSIVKMVLLPIVLGLIVHKLGSKTEKLTDALPLVSVAAIVLIIGAVVSKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGL-PYDAQKALTIEVGSGLAAALAAAHFAA-----APVVAVPGALFSVWHNISGSLLATYWAA | |||||||||||||
5 | 4bwzA | 0.17 | 0.16 | 5.28 | 1.67 | CNFpred | -----------VVIGEVLAGVLVGPALLGLV----HEGEILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFALFLGTALVATSVGITA-PYSRIILGAAVIDDVLGLIVLACVN-VGSPLGFALALGVGMAALAASIGLAPIVGAFLGGMLLSEVRERLEEPIFAIESFLAPIFFAMVGVRLELSASPVVLVAGTVVTVIAILGKVLGGFLGALTQVRSALTVGCGMAPRGEVGLIVAALGLKA----GAVNEEEYAIVLFMVVFTTLFAPFALKPLIA | |||||||||||||
6 | 4bwzA | 0.20 | 0.19 | 6.09 | 3.04 | HHsearch-2 | QPVVIGEVLAGVLVGPALLGL----VHE------GEILEFL---AELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFEDVLGLIVLACVNGVAETGQAVFVGLAVFLSTLIARLPLERLPVGPLGFALALGVGMAALAA--SIGLAPIVGAFLGGMLLSEVREKYEPIFAI-ESFLAPIFFAMVGVRLELSALASVLVAGTVVTVIAILGKVLGGFLGALTQGVRSALVGCGMAPRGEVGLIV----AALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIA | |||||||||||||
7 | 3zuxA | 0.19 | 0.18 | 5.75 | 1.92 | Neff-PPAS | ILSKISSFIGKTFSLWAALFAAAAFFAPDTF-------KWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKVVIIGVIAQFAIMPATAWCLSKLLNLEIAVGVILVGCCPGGTASNVMTYLAR----GNVALSVAVTSVSTLTSPLLTPAIFLMLAGEGMLMSIVKMVLLPIVLGLIVHKLGSKTEKLTDALPLVSVAAIVLIIGAVVSKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWAA | |||||||||||||
8 | 4bwzA | 0.20 | 0.19 | 6.01 | 4.37 | HHsearch | IFKR-LNQP--VVIGEVLAGVLVGPALLGLVH-EGEILEFL---AELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFEDVLGLIVLACVNGVAETGQAVFVGLAVFLSTLIARLPLERLPV-GSPFALALGVGMAALAA--SIGLAPIVGAFLGGMLLSEVREKYEPIFAI-ESFLAPIFFAMVGVRLELSALASPLVAGTVVTVIAILGKVLGGFLGALTQGVRSALVGCGMAPRGEVGLIV----AALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLI- | |||||||||||||
9 | 4bwzA | 0.17 | 0.17 | 5.60 | 1.98 | PROSPECTOR2 | GAEHLLEIFYLLLAAPVVIGEVLALVGPALLGLVHEGEIL-EFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFEDVLGLIVLACVNGVAETGQVVFVGLAVFLSTLIARLPLERLPVGSPLGFALALGVGMAAL-AASIGLAPIVGAFLGGMLLSEVREKYEEPIFAIESFLAPIFFAMVGVRLELSALASPLVAGTVVTVIAILGKVLGGFLGALTQGVRSATVGCGMAPRGEVGLIV----AALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIE | |||||||||||||
10 | 4bwzA | 0.20 | 0.18 | 5.89 | 1.99 | SAM | --VVIGEVLAGVLVGPALLGLVHE-------------GEILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFEDVLGLIVLACVNGVAETGQ-VFVGLAVFLSTLIARLPLERLPV-GSPLGFALGVGMAALAA--SIGLAPIVGAFLGGMLLSEVREKYEEPIFAIESFLAPIFFAMVGVRLELSALASPLVAGTVVTVIAILGKVLGGFLGALTQGV-SALVGCGMAPRGEVGLIV----AALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |