>PF03616 (366 residues) TFSTYETLALASLVLLLGYFLVKRINVLKTFNIPEPVVGGFIVAIGLLIWHKIDGTSFNF DKNLQTTMMLVFFTSIGLSANFSRLIKGGKPLVVFLFIAALLIFGQNVIGIASSMALGIH PAYGLLAGSVTLTGGHGTGAAWADTFAHQFNLQGATEIAIACATFGLVFGGIIGGPVARF LLNRQKQGENPENDEVDDIQEAFEHPTYKRKITARSLIETIAMISVCLLIGQYLDVQTKG TALQLPTFVWCLFTGVIVRNILSNIFRFQVAESAIDVLGSVGLSIFLAIALMSLRLWELA GLAIDVLIVLAIQVAFMAAFAIFITYRAMGKDYDAVVLSAGHCGFGLGATPTAIANMQAV TSRFGP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TFSTYETLALASLVLLLGYFLVKRINVLKTFNIPEPVVGGFIVAIGLLIWHKIDGTSFNFDKNLQTTMMLVFFTSIGLSANFSRLIKGGKPLVVFLFIAALLIFGQNVIGIASSMALGIHPAYGLLAGSVTLTGGHGTGAAWADTFAHQFNLQGATEIAIACATFGLVFGGIIGGPVARFLLNRQKQGENPENDEVDDIQEAFEHPTYKRKITARSLIETIAMISVCLLIGQYLDVQTKGTALQLPTFVWCLFTGVIVRNILSNIFRFQVAESAIDVLGSVGLSIFLAIALMSLRLWELAGLAIDVLIVLAIQVAFMAAFAIFITYRAMGKDYDAVVLSAGHCGFGLGATPTAIANMQAVTSRFGP | |||||||||||||||||||
1 | 5a1sA | 0.13 | 0.12 | 4.30 | 2.41 | SPARKS-K | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGG----APVMIFLVAAYFVYAGIFTQKEIDAISNVMIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCF---GIPVDRIMMLYVLPIGGGNGGAVPLSEIYHSVTGREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGEL--VRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSIVSIHYFAWMVLIVAALNASCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLIS | |||||||||||||
2 | 5a1sA | 0.15 | 0.14 | 4.81 | 2.89 | FFAS-3D | --DLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDADKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGAS---LFGIVIGLCFGIPVDRIMMLYVLPIMGGGAGAVPLSEIYHSVTGREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGE--LVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSIVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGD-LEVLSAISSRLG- | |||||||||||||
3 | 5a1sA | 0.14 | 0.14 | 4.65 | 3.04 | HHpred | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIG-----GAPVMIFLVAAFVYAGIFTQKEIDNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGA---SLFGIVIGLCFGIPVDRIMMLYVLIMGGGNGAGAVLSEIYHSVTGREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFK--TEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPGGVSIHYFAWMVLIVAALNASCSPIK-AGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYIESSITA-GLCMANRGGSGDL-EVLSACNRMN-- | |||||||||||||
4 | 5a1sA | 0.14 | 0.14 | 4.66 | 1.74 | MUSTER | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAQKEIDAISNVMKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLC----GIPVDRIMMLYVLPIGGGNGGAVPLSEIYHSVTGREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFK--TEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSGVSIHYFAWMVLIVAALNASCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSAC-----RM | |||||||||||||
5 | 5a1sA | 0.13 | 0.12 | 4.20 | 1.96 | CNFpred | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIG----GAPVMIFLVAAYFVYAGIFTQKEI-NFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGAS---LFGIVIGLCFGIPVDRIMMLYVLPIMGGGAGAVPLSEIYHSVTGRSEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFKTEDDE---AGQITHRETAVGMVLSTTCFLLAYVVAKKILPSGVSIHYFAWMVLIVAALNASCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACN------ | |||||||||||||
6 | 5a1sA | 0.15 | 0.14 | 4.87 | 5.25 | HHsearch-2 | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAY----FVYAGIFTQKEIDAFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGA---SLFGIVIGLCFGIPVDRIMMLYVLPIMGGNGAGAVLSEIYHSVTGRSEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFK--TEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPGGVSIHYFAWMVLIVAALNASGSPEIKAG-AKRLSDFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYIESSITA-GLCMANRGGSGDLE-VLSA-CNRMNL | |||||||||||||
7 | 5a1sA | 0.13 | 0.13 | 4.45 | 2.64 | Neff-PPAS | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCF---GIPVDRIMMLYVLPIMGGGAGAVPLSEIYHSVTGREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGEL--VRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSGVSIHYFAWMVLIVAALNASCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLIS | |||||||||||||
8 | 5a1sA | 0.15 | 0.14 | 4.87 | 7.16 | HHsearch | PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAY----FVYAGIFTQKEIDAFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGA---SLFGIVIGLCFGIPVDRIMMLYVLPIMGGNGAGAVLSEIYHSVTGRSEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKASFK--TEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPGGVSIHYFAWMVLIVAALNASGSPEIKAG-AKRLSDFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYIESSITA-GLCMANRGGSGDLE-VLSACN-RMN- | |||||||||||||
9 | 5a1sA | 0.14 | 0.13 | 4.51 | 2.29 | PROSPECTOR2 | STDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAY----FVYAGIFTQKEIDAILNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGAS---LFGIVIGLCFGIPVDRIMMLYVLPIGGGNGAAVPLSEIYHSVTGREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELV--RKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPGGVSIHYFAWMVLIVAALNASCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVVFSMMVLE--- | |||||||||||||
10 | 5a1sA | 0.14 | 0.13 | 4.55 | 2.50 | SAM | --DLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAY----FVYAGIFTQKEIDAV-NLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGA---SLFGIVIGLCFGIPVDRIMMLYVLPIMGGNGAGAVLSEIYHSVTGRSEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEGELVRKAS----TEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPGGVSIHYFAWMVLIVAALNASCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYIESSITA-GLCMANRGGSGDLEVL---------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |