Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | SEDLWISSINSLLLNAEVKSEFDAMEINRLEDAARTGGYDTIRYKSRAEKIVIAHARVLESSIESVLKFNPYSTQNMVHGLSPPIAALKSITWGDSFMTAAPYYTKLFGVNCDTVMDLLHISIAILRHANANSGNVDYYLLMGELESALKSYPNLVKYVNFYRSGYVKFMSFLAHLEQRRVEAHHASGRVALEISAALEDLARTHSPEGARRALEYGVSIIIPSVNTIMSIAEELKKDHVEEFEGTAYSEY |
1 | 5cwcA | 0.13 | 0.10 | 3.33 | 0.80 | SPARKS-K | | ----------------SEKEELRERLVKICVENAKRKGDDTEEAREAAREAFELVREAAERVLELAIRLIKECVENAREGYD----ISEACRAAEAFKRVAEAAKRAGITSSEVLELAIRLIKECVENAQREGY--DISEACRAAAEAFKRVAEAAKRAGI--TSSETLKRAIEEIRKRVEEAQREGNDISEACRQAAEEFRKKAEELKRR---------------------------------------- |
2 | 4iggA1 | 0.08 | 0.06 | 2.24 | 1.08 | FFAS-3D | | ESQFLKEELVAAVEDVRKQ----GDLMKAAAGEFADDPCS-----SVKRGNMVRAARALLSAVTRLL-----------------------------------ILADM--ADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVD---KLNIMAAKRQQELKD-VGHRDQMAAARGILQKN----VPILYTASQACLQHPDVAAYKANRDL-------IYKQLQQAVTGISNA----AQATASDD- |
3 | 5y6pa2 | 0.13 | 0.08 | 2.63 | 0.33 | HHpred | | --KLYRTASMSAIMQAEQQDRFQLGELNEIVAFLNSG-----SKRLIANVISNNSNLMVSKAADKIFNVVRYGSTRMQK-------SLRDLDWFLRYL----TYAIVAG-DTNILSVNIRGLRELID---N--ACSAASVALREMRKTLFDNASQELVKEYFNVIINEFD--------------------------------------------------------------------------------- |
4 | 5cwqA | 0.12 | 0.10 | 3.69 | 0.75 | MUSTER | | EAERRLQEARKRSEEARERGD-LKELAEALIEEARAVQELARVACERNSEEAERASEKAQRVLEEARKV----SEEAREQGDDEVLALALIAIALAVLALAEVACCR---NSEEAERASEKAQRVLEEARK------VSEEAREQGDDEVLALALIAIALAVLALAEVACCRGN--KEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEA--------EQLAREARRHVQECRGGWLEHHH---- |
5 | 5cwnA | 0.17 | 0.12 | 4.08 | 0.79 | CNFpred | | ------MDPEEILERAK-------ESLERAREASER--GDEEEFRKAAEKALELAKRLVEQAPELVLEAA------------------------KVALRVAELAAKNGDVFKKAAESALEVAKRLVEVASKE----GDPELVLEAAKVALRVAELAADKEVFKKAAESALEVAKRLVEVASKE---DPELVEEAAKVAEEVRKLAKKQGDEEVYEKA-------RETAREVKEELKRVR------------ |
6 | 1vt4I3 | 0.18 | 0.10 | 3.25 | 0.65 | HHsearch-2 | | -------------------------------------EYALHR-------SIVD-----HYNIPKTFDSDPYLDQYFYS------HIGHHLK-----NIEHPERMTLFRMVFLDFRFLEQK----IRHSTAWNASGSI----------LNTLQQLKFYKPYICDNDPKYERLVAILDF-------------------LP---------------KIEENLICSKYTDLLRI--ALMAEDEAIFEEAHKQVQ |
7 | 5cwqA | 0.10 | 0.09 | 3.36 | 0.80 | Neff-PPAS | | EAERRLQEARKRSEEARERGD-LKELAEALIEEARAVQELARVACERNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGN---------------KEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRGGWLEHHH------------ |
8 | 3f1iH | 0.16 | 0.06 | 2.11 | 0.37 | HHsearch | | --------------------------------------------------------------------------------------------SHEQ--------------FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSIGMHPQLLELLNQLDERRLYYEGLQDKLAQIRD-ARGALS-----------ALREEH-REKLRRAAEE----------------------------------- |
9 | 2yfaA | 0.09 | 0.08 | 3.03 | 0.60 | SP3 | | ------GSHMGDIGQLNKD----LTDLRIARLQYMIAN-GDDTAAANTLAKLDAFSKQQAYLATTF-----KSPENVKLELGDTISAYKLS--LNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQLLQVRIDVRGYIAELDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQ---GADIVKRSDALYQIQLER--------- |
10 | 5cwmA | 0.14 | 0.12 | 4.06 | 0.96 | PROSPECTOR2 | | DPEDELKRVEKLVKEAE----------ELLRQAKEKGS---EEDLEKALRTAEEAAREAKKVLEQAEKEGD------------PEVALRAVELVVRVAELLLRIAKESGSELRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKALERALRVAEEAARLAKRVLELAEEVARRAVELVKRVAELLERIARESGSEEAKERAER-------VREEARELQERVKEL----------RER |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|