Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | PVYQRCFQDGAIVKQNPSKEAVTEVCLKDDVSMIKTEARYVRNATGVFSNNVAIRKWLVSDWHDCRPKKIIGGHINVIEVGDDLSLHTESYVCSADCTIGVDKETAQVRLQTDTTNHFEIAGTTVKSGWFKSTTYITLDQTCEHLKVSCGPKSVQFHACFNQHMSCVRFLHRTILPGSIANSICQNIEIIILVTLTLLIFILLSILSKTYICYLLMPIFIPIAYMYGIIYNKSCKKCKLCGLVYHPFTECGTHCVCGARYDTSDRMKLHRASGLCPGYKSLRAAR |
1 | 5cqcA | 0.11 | 0.10 | 3.52 | 0.81 | SPARKS-K | | FDKSSAFYGAYGFQSKKND--QQIFLFRPDSDYVAGYHVDAKSDAGQPATFILPFVEMPTDIT----KGVQHQVLLTISYDKSKQLTPTVYDS-------IGRDTY-----SESLSSYAIKSTDFTLGKFT-RAAYNTEGNC-------------GSYTFRTIKEVISSSAQGYLTSQHVQDIESCIKYVVDIESALTELSEFIVALEDYGKLRSQTAKLTAVELLIGILNDIKGK----NEISEQYDKLVKEVDCLMDSSLGKLVQFHLKN---LGAESLQKLV |
2 | 2yn6A | 0.13 | 0.09 | 3.06 | 0.66 | FFAS-3D | | -----------------------------DVSVIFINKIYGVNTLEQTYKVDGYIVAQWTGW---VPALEFINVVKRLMLFPDGRVINARFLGSFSNDMDFDRQQFVLELEPFSYNNQQLQVYTENIDNEEIDEWWIRGKASTHISDINQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASERLQTSFTLMLTVVAYAFYTSVIDQMIIAGYGSIFAAILLIIFAHH------------------------------------------------------- |
3 | 3bz5A2 | 0.15 | 0.05 | 1.53 | 0.31 | HHpred | | ----------------------------QDFSSVGAEGQTITMPKELNNSLTI----AV-----SPDLLDQFGNPMNIEPGDGGV---------------YDQATNTITWENLSAVTYTFTSEN---GAIVGTVTTPFE-------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 3d23A | 0.11 | 0.10 | 3.68 | 0.64 | MUSTER | | PTSKIE---PCIVSVTYGSMTLNGLWLDDKVYCPRHVICSMNEPDYSALLCRVLGDFTIMS-MSLTVVSYQQGCQLVLTVSLQNPYTPKYTFGNVKP-----GETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFL---CGSCGSVGYVLTGDSVKFVYMHQLELSTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNC--AWFVQNDVCSTEDFNVWAMANGFSQVKADLVLLASMTGVSIETLLAA----IKRLYMGFQGRQILGSCTFEDEL |
5 | 6b6lA | 0.09 | 0.06 | 2.41 | 0.72 | CNFpred | | ----------TFLKITN------PLHFETW--GTFVTTPVATA---DKAEVHVQSVLANT------EKVTGKVILETRIVDKNHTVARKEQLVT----LDNKKTEVGHALEVLAPQLWSID----NPYLYQVVNRLLQDKVIDEEYISIGIRNIAFSAE------NGFQLNGKSM-KLKGGCIHHDNGLLGAKAFDRAEERKIELLKAAGFNALRLSHNPPSIALLNACDRL-------GMLVIDEAFD------------------------------------ |
6 | 1vt4I3 | 0.12 | 0.05 | 1.72 | 0.89 | HHsearch-2 | | --------------------------------------------------------------------------------------------------------------------------------------------------------EYALHRSIVDHYNIPKTFDSDLIPPYLDQYFYHHLKNIEMTLFRMVFLDFRFLEQKIRAWNILTLQQLKFYKPYI--CDNDPK-YERLVNAILDFLP------------------KIEENLICSKYTDLRIAL |
7 | 5vobA2 | 0.08 | 0.07 | 2.92 | 0.89 | Neff-PPAS | | --------SQQLKAQDSLGEQPTTVPPPIDLSIPHVWMPPQTTPHGWTESHTTSGLHRPHFNQTCILFDG------------HDLLFSTVTPCLHQGFYLIDELRYVKITLTEDFFVVTVSIDTPMLLIFGHLPRVLFKAPYDNFILRQTEKHELLVLVKKDQLNRHSYLKDPDFLDAALDFNYLDLSALLRNSFHRYAVDVLKSGRCQMLDRRTVEMAFAYALALFAAARQEEAGAQALLQIQEFMITCLSQTPRTTLLLYPTAVDLAKRALWTPNQITDITSL |
8 | 3w5kB2 | 0.21 | 0.03 | 1.00 | 0.53 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PFSCPHCSRAFAKY-QCQ---ACARTFSRMSLLHKHQESG-CSGCPR----- |
9 | 3osqA | 0.07 | 0.07 | 2.89 | 0.66 | SP3 | | PLIAA--DGGYAFKYENHLSHNVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGVSKGEELFTGVVPILVELDGDVHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLVQCFYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFETLVNRIELKGIDFKEDGNILGHKLEYNFNGGKYDIKDVGVDNLTFLVDLIKNKHMNADTDYSIAE |
10 | 3tloA | 0.07 | 0.06 | 2.56 | 0.84 | PROSPECTOR2 | | SGLKKCYGSTVLNGVPSTTVLIDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMVLRIKVSQSNVHTPKHVFKTLKFNILACYEGIASGVFGVNLRTNFTIKGSFIN-------GACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSV--------------YGNFDDQPSLQVESANLMLSDNVVAFLYAALLVDGFNEWAMVECYSILAAKTGVSVEQLLASIQHLHEGFGGKNILGY-----------SSLCDEFTLAEVVKQMYGV---------NL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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