>PF03522 (394 residues) RPNLLNFANLITKNQSLMIVGNVVEQKLNYKERKAHVQAGKKVLNDLKIKAFYNILDGLP FDESVRAMIQSTGFGRLTPNILMVGYKQGWRTCGTEELHTYYNVLHNAFDNRLALTILRL PNGLDCSHLVPPKPELDLADSALNIMSSMAYINTPQGLRIQKGLMPVNSNLDLHGMAASS EQISVNVPNEDQDHRMNPNSTTPGKELNMFREKQPAGYIDVWWLYDDGGLTILLPYIIST RAKWSECQIRVFALASQQTNVEEERENMTILLDKLRINYVSLIMVTLSDKPQEATIQAHR ALLSTLVEGQETDVFVSASEQAQLEEKTYRQLRLRELLQQYSKHASLIVLSMPIPRKGIV SAPLYMSWLEMLTKDMPPFLLVRGNQTSVLTFYS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RPNLLNFANLITKNQSLMIVGNVVEQKLNYKERKAHVQAGKKVLNDLKIKAFYNILDGLPFDESVRAMIQSTGFGRLTPNILMVGYKQGWRTCGTEELHTYYNVLHNAFDNRLALTILRLPNGLDCSHLVPPKPELDLADSALNIMSSMAYINTPQGLRIQKGLMPVNSNLDLHGMAASSEQISVNVPNEDQDHRMNPNSTTPGKELNMFREKQPAGYIDVWWLYDDGGLTILLPYIISTRAKWSECQIRVFALASQQTNVEEERENMTILLDKLRINYVSLIMVTLSDKPQEATIQAHRALLSTLVEGQETDVFVSASEQAQLEEKTYRQLRLRELLQQYSKHASLIVLSMPIPRKGIVSAPLYMSWLEMLTKDMPPFLLVRGNQTSVLTFYS | |||||||||||||||||||
1 | 3g40A | 0.11 | 0.07 | 2.45 | 1.48 | SPARKS-K | LMGTFDFLRDITYPKGSVKLLGL----ADKENLLSQLPSISEGFQEEGVFSSWTIIE-----ENLVVGMEALTGSFFRPSILFLRLPE-----NRDRDEEIREIIRKASMYRMGVLLFSKHP------------------------------------------------------------------------QAGLGRQ---------------NLINLWIENRNMDLALLIAYKLKSNWK---ASLSFMTFAPTAIQAQAAENFLQSLAELARIP--------------------------------NVKMQVLRENPIKS---------------SKLPFASLHIFSLDPNPD-----LDLARHLMEKAG--SSCIFALDSEENALALL- | |||||||||||||
2 | 3g40A | 0.11 | 0.07 | 2.38 | 1.74 | FFAS-3D | KAGTFDFLRDITYPKGSVKLLGLADKE----NLLSQLPSISEGFQEEGVFSSWTI-----IEENLVVGMEALTGSFFRPSILFLRLPE-----NRDRDEEIREIIRKASMYRMGVLLFSKHPQAGL---------------------------------------------------------------------------------------GRQNLINLWIENELGNMDLALLIAYKLKSNWK-ASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVLRENPIKS-----------------------------------------------SKLPFASLHIFSLDPNPD--------LDLARHLMEKAGSCIFALDSGEEALALL- | |||||||||||||
3 | 3g40A | 0.12 | 0.07 | 2.58 | 4.10 | HHpred | LMGTFDFLRDITYPKGSVKLLGLADKE----NLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPEN-----RDRDEEIREIIRKASMYRMGVLLFSKHPQA---------------------------------------------------------------------------------------GLGRQNLINLWIENRNMDLALLIAYKLKS--NWK-ASLSFMTFAPTAIQAQAAENFLQSLAELARIPNV--KMQVLRE-N-------P-----------------I------------------KS--SKLPFASLHIFSLDPNPD----LD-LARHLMEKAGS--SCIFALDSGENALALL- | |||||||||||||
4 | 3g40A | 0.13 | 0.08 | 2.65 | 1.44 | MUSTER | LMGTFDFLRDITYPKGSVKLLGLADKE----NLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPE-----NRDRDEEIREIIRKASMYRMGVLLFSKHPQAGL---------------------------------------------------------------------------------------GRQNLINLWIENRNMDLALLIAYKLKS--NW-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNV--KMQVLRENPIK---------------------------------------------SSKLPFASLHIFSLDPNPD-----LDLARHLMEKAGS--SCIFALDGEENALALL- | |||||||||||||
5 | 3g40A | 0.11 | 0.06 | 2.31 | 1.43 | CNFpred | LMGTFDFLRDITYPKGSVKLLGLA----DKENLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPENR-----DRDEEIREIIRKASMYRMGVLLFSKHPQAGLG---------------------------------------------------------------------------------------RQNLINLWIENR-MDLALLIAYKLKSN---WKASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVLRE--------------NPIKSS---------------------------------KLPFASLHIFSLDPNP-----DLDLARHLMEKA--GSSCIFALDSGEENALALL | |||||||||||||
6 | 3g40A | 0.12 | 0.07 | 2.58 | 4.05 | HHsearch-2 | LMGTFDFLRDITYPKGSVKLLGLAD--K--ENLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPEN-----RDRDEEIREIIRKASMYRMGVLLFSKHPQA---------------------------------------------------------------------------------------GLGRQNLINLWIENRNMDLALLIAYKLKS--NWK-ASLSFMTFAPTAIQAQAAENFLQSLAELARIPNV--KMQVLRE-NP------------------------------------------IKS--SKLPFASLHIFSLDPNPD----LD-LARHLMEKAGS--SCIFALDGEENALALL- | |||||||||||||
7 | 3g40A | 0.11 | 0.07 | 2.45 | 2.06 | Neff-PPAS | LMGTFDFLRDITYPKGSVKLLGLADKE----NLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPE-----NRDRDEEIREIIRKASMYRMGVLLFSKHPQAGL---------------------------------------------------------------------------------------GRQNLINLWIENRNMDLALLIAYKLKSNWK---ASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVLRENPIK-----------------------------------------------SSKLPFASLHIFSLDPNPD-----LDLARHLMEKAGS--SCIFALDGEENALALL- | |||||||||||||
8 | 3g40A | 0.12 | 0.07 | 2.58 | 6.29 | HHsearch | LMGTFDFLRDITYPKGSVKLLGLAD--K--ENLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPEN-----RDRDEEIREIIRKASMYRMGVLLFSKHPQA---------------------------------------------------------------------------------------GLGRQNLINLWIENRNMDLALLIAYKLKS--NWK-ASLSFMTFAPTAIQAQAAENFLQSLAELARIPNV--KMQVLRE-NP------------------------------------------IKS--SKLPFASLHIFSLDPNPD----LD-LARHLMEKAGS--SCIFALDGEENALALL- | |||||||||||||
9 | 3g40A | 0.11 | 0.07 | 2.38 | 2.04 | PROSPECTOR2 | LMGTFDFLRDITYPKGSVKLLGLADKEN----LLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPEN-----RDRDEEIREIIRKASMYRMGVLLFSKHPQAG---------------------------------------------------------------------------------------LGRQNLINLWIENRNMDLALLIAYKLKS--NW-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVLRENPIKS-----------------------------------------------SKLPFASLHIFSLDPNPD-----LDLARHLMEKAGS--SCIFALDSGEENALALL | |||||||||||||
10 | 3g40A | 0.13 | 0.07 | 2.57 | 2.49 | SAM | LMGTFDFLRDITYPKGSVKLLGLAD----KENLLSQLPSISEGFQEEGVFSSWTII-----EENLVVGMEALTGSFFRPSILFLRLPEN-----RDRDEEIREIIRKASMYRMGVLLFSKHP------------------------------------------------------------------------------------------LGRQNLINLWIENRNMDLALLIAYKLKS--NWK-ASLSFMTFAPTAIQAQAAENFLQSLAELARIPNV--KMQVRE-NP--------------------------------------------KS--SKLPFASLHIFSLDPNPD----LD-LARHLMEKAGS--SCIFALDSGENALA--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |