Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | KLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYLHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQSCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLYILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWES |
1 | 4n6hA2 | 0.12 | 0.11 | 4.01 | 2.28 | SPARKS-K | | IVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT---PAKAKLINICIWVLASGVGVPIMVMAVTRPRDG---AVVCMLQFP-SPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSV------RLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ |
2 | 6m9tA2 | 0.11 | 0.10 | 3.56 | 2.74 | FFAS-3D | | RRRESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWSGRLCTFFGLTMTVFGLSSLFIASAMAVERALAIRAP---HWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQYTVQWPGTWCFI--------STNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVS------------RGSWGRITTETAIQLMAIMCVLSVCWSPLLIMMLKMIFNEKQCNFFLIAVRLASLNQILDPWVYLLLRKILGRPLEV |
3 | 4rnbA | 0.10 | 0.10 | 3.59 | 3.71 | HHpred | | -WKNHHMRTVTNYFIVNLSLADVLVTIT-CLPATLDITETWFFGQSLCKVIPYLQTVSVSVSVLTLSCIALDRWYAIHP----------STAKRARNSIVIIWIVSCIIMIPQAIVMECSTVF----KTTLFTVCDERWGGEIYPMYHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQGIDCSFWNESRSKQIRARRKTARMLMVVLLVFAICYLPISILNVLRVFGMDVYAWFTFSHWLVYANSAANPIIYNFLSGKFREEFKA |
4 | 4n6hA | 0.12 | 0.12 | 4.11 | 1.80 | MUSTER | | IVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCPVKALDF----RTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPS----PSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR------LLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ |
5 | 4ww3A | 0.11 | 0.10 | 3.70 | 1.68 | CNFpred | | ---TKSLQTPANMFIINLAFSDFTFSLVNGLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGPMAA----SKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE------GVLCNCSFDYRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMALRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQ |
6 | 5zbhA | 0.13 | 0.12 | 4.34 | 0.86 | HHsearch-2 | | ILKQKEMRNVTNILIVNLSFSDLLVAIM-CLPFTFTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLINPRGWR------PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFTLDAYKDKYVCFDQFPSDSHLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEMLRIAYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVDWNHQIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQF |
7 | 4djhA1 | 0.11 | 0.10 | 3.68 | 1.94 | Neff-PPAS | | ---YTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKA---LDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQF-PDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSD-----------RNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRD |
8 | 5zbhA | 0.13 | 0.13 | 4.43 | 1.38 | HHsearch | | ILKQKEMRNVTNILIVNLSFSDLLVAIM-CLPFTFTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLINPRGWR------PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFTLDAYKDKYVCFDQFPSDSRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEMLRIAYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVDWNHQIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQ- |
9 | 4djhA1 | 0.11 | 0.11 | 3.78 | 2.18 | PROSPECTOR2 | | SIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVHPVKAL----DFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDV-----IECSLQFPDWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLL-----------SDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRP |
10 | 5zbhA | 0.13 | 0.12 | 4.31 | 3.29 | SAM | | -LKQKEMRNVTNILIVNLSFSDLLVAIMC-LPFTFTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLINPRGWR------PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEP-TLDAYKDKYVCFDQFPSDHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIF-----AYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVDWNHQNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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