>PF03354 (478 residues) EFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD GKDPTVVILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRI LNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKG TSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGF IFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVID FIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWV ADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVVILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHE | |||||||||||||||||||
1 | 5oe8A | 0.12 | 0.10 | 3.42 | 1.58 | SPARKS-K | KKQLKVLTW--WRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTF---NEQNFGMAGKTIGALRRNITPLKRMLKSRG-----YRVKDHRADNYLTITFKTNYFYLFGKDESSQQGITLAGMFFDEVALMP-ESFVNQATARCS-VDGAKLWFNCNPAG-PYHWFKVEY--LDKLDEKN-----LLHLHFT-------------MDDNLSLS-------------KQVKERYQRMYKGVFYQRYILGLWVLAE-GIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGT-QNPTTFGLWGLYNG-VWYKVKEYHYD------GRKENKQK---------------------TDQEYYEDLMKFIEDIEHKFKGVIVDPS-AASFIALLRQKGIK--VIKAKNDV---LDGIRNVATALNKKMILYNDCKETFREYSSYVWDEKERGEDKPVKQN----DHQLDADRYFVNTILFG- | |||||||||||||
2 | 5oe8A | 0.12 | 0.10 | 3.54 | 2.28 | FFAS-3D | KKQLKVLTWWRKASPVSDKDG--IICDGSIRAGKTIVMSFSYVMWAM---DTFNEQNFGMAGKTIGALRRVITPLKRMLKSRGYRVKD---HRADNYLTITFKGKTNYFYLFGGKDESIQGITLAGMFFDEVALM-PESFVNQATARCSVDGAKLWF--NCNPAGPYHWFKVEYLDKLD-------EKNLLHLHFT-------------MDDNLSLS-------------KQVKERYQRMYKGVFYQRYILGLW-VLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYG-TQNPTTFGLWGLY-NGVWYKVKEYHYDGRKE---------------------------NKQKTDQEYYEDLMKFIEDIEKKFKGVIVDPSA-ASFIALLRQKGIK-----VIKAKNDVLDGIRNVATALNKKMILYNDCKETFREYSSYVWDEKAAERGE--DKPVKQNDHQLDADRYFVNTILF-- | |||||||||||||
3 | 5oe8A | 0.13 | 0.10 | 3.59 | 1.56 | MUSTER | KKQLKVLTWW--RKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMD---TFNEQNFGMAGKTGALRRNVITPLKRMLKSRG-----YRVKDHRADNYLTITGKTNYFYLFGGKQDLIQGITLAGMFFDEVALM-PESFVNQATARC-SVDGAKLWFNCNPAG-PYHWFKVEYL-------DKLDEKNLLHLHFT-------------MDDNLSLS-----KQVKERYQRMY--------KGVFYQRYILGLWVLA-EGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGTQ-NPTTFGLWGLYNGVWYKVKEYHYDGRK----------------------------ENKQKTDQEYYEDLMKFIEDIEKKFKGVIVDPSA-ASFIALLRQKGIK-----VIKAKNDVLDGIRNVATALNKKMILYNDCKETFREYSSYVWDEAERGEDKPVKQND----HQLDADRYFVNTILFG- | |||||||||||||
4 | 3cpeA | 0.11 | 0.09 | 3.25 | 2.41 | CNFpred | DYQRDMLKIMSS--------KRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELLPDLQPGIVEWN---KGSIELD-NGSSIGAYASSPDAVRGNSFAMIYIEDCAFIPFHDSWLAIQPVISSGRRSKIIITTTPNG--LNHFYDIWTAAVEG------KSGFEPYTAIWNS-----VKERLYNDEDIFDD--GWQWSIQTING---------SSLAQFRQEHTAAFEGT-SGTLISGMKLAVMDFIEVTP-DRKYIATLDCSEGQDYHALHIIDVTD-DVWEQVGVLHSNT---------------------------------ISHLILPDIVMRYLVEYN--ECPVYIELNSGVSVAKSLYMDLEYEGVICDKQTKRTKAVGCSTLKDLIEKDKLIIH-HRATIQEFRTFSEKG-----VSWAAEEG-YHDDLVMSLVIFGWLSTQSK | |||||||||||||
5 | 4idhA | 0.08 | 0.06 | 2.55 | 2.23 | HHsearch-2 | PIFEPFI----E-------AHRYKVAKGGRGSGKSWAIARLLVEAAR-R----QPVRILCARELQNSISSVIRLLEDTIEREG-----YSAEFEIQRSMIRHLGTNAEFMFYGNNPTKIKSLEIDICWVEEAEAVT-KESWDILIPTIRK-PFSEIWVSFNPKNI-LDDTYQRFV------VN--PPDDICLLTVNY-------------TDNPHFPE----V-LRLEMEECK------RRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDALGWKAKGAVVSAHDPSDTPDAKGYASR--H-GSVVKRI-AEGL----------------------------------LMDINEGADWATSLAIE--DGADHYLWDGDGVAGLRRQTTEAFKKITATMFKGSESKRAQFYYALADRLYHGELSFKMLEKLFAELTQIQRKFNNNGKLELMTKLGIPSPNLADALMMCMHCPALVR | |||||||||||||
6 | 5oe8A | 0.11 | 0.09 | 3.37 | 2.36 | Neff-PPAS | KKQLKVLTWW--RKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTF---NEQNFGMAGKTIGALRNVITPLKRMLKSRGYRVKDHRADN---YLTITFKGKTNYFYLFGGKDDLIQGITLAGMFFDEVALM-PESFVNQATARC-SVDGAKLWFNCNPAGPYH--------WFKVEYLDKLDEKNLLHLHFT-------------MDDNLSLS-------------KQVKERYQRMYKGVFYQRYILGLWVLA-EGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYG-TQNPTTFGLWGLYNGVWYKVKEYHYDGRK----------------------------ENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIK-----VIKAKNDVLDGIRNVATALNKKMILYNDCKETFREYSSYVWDEKAAERGEDK--PVKQNDHQLDADRYFVNTILFG- | |||||||||||||
7 | 4idhA | 0.08 | 0.06 | 2.55 | 2.50 | HHsearch | PIFEPFI----E-------AHRYKVAKGGRGSGKSWAIARLLVEAAR-R----QPVRILCARELQNSISSVIRLLEDTIEREG-----YSAEFEIQRSMIRHLGTNAEFMFYGNNPTKIKSLEIDICWVEEAEAVT-KESWDILIPTIRK-PFSEIWVSFNPKNI-LDDTYQRFV------VN--PPDDICLLTVNY-------------TDNPHFPE----V-LRLEMEECK------RRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDALGWKAKGAVVSAHDPSDTPDAKGYASR--H-GSVVKRI-AEGL----------------------------------LMDINEGADWATSLAIE--DGADHYLWDGDGVAGLRRQTTEAFKKITATMFKGSESKRAQFYYALADRLYHGELSFKMLEKLFAELTQIQRKFNNNGKLELMTKLGIPSPNLADALMMCMHCPALV- | |||||||||||||
8 | 3cpeA | 0.10 | 0.09 | 3.14 | 2.38 | PROSPECTOR2 | DYQRDMLKIMSSK--------RMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL--QPGIVEWNKGSIEL-DNGSSIGAYASSPDAVRGNSFAMIYIEDCAFIPNHDSWLAIQPVISSGRRSKIIITTTPNG--LNHFYDIWTAAV------EGKSGFEPYTA-----IWNSVKERLYNDEDIFDDG-----------WQWSIQTINGSSLAQFRQEHTAAFEGTS-GTLISGMKLAVMDFIEVPEPDRKYIATLDCSEGQDYHALHIIDVTDDVWEQVGVLHS----------------------------------NTISHLILPDIVMRYLVE--YNECPVYIELNSTVSVAKSLYMDLEYEGVICMKQTKRTKAVGCSTLKDLIEKDKLIIH-HRATIQEFRTFSEK---GVSWAA---EEGYHDDLVMSLVIFGWLSTQDY | |||||||||||||
9 | 3ezkA | 0.11 | 0.09 | 3.24 | 3.28 | SAM | -YQRDMLKIMSS--------KRMTVCNLSRQLGKTTVVAIFLAHFVCF--N--KDKAVGILAHKGSMSAEVLDRTKQAIELLPD---FLQPIVEWNKGSIEL-DNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNHDSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIWTAAV---EG---KSGFEPYTAIWN-----SVKERLYNDEDIFD-------DGWQWSIQTIN----GSSLAQFRQEHTAAFEGTS-GTLISGMKLAVMDFIEVPEPDRKYIATLDCSEGQDYHALHIIDVTD-DVWEQVGVLH---------------------------------SNTISHLILPDIVMRYLVE--YNECPVYIELNSTVSVAKSLYMDEYEGTDLGMKQTKRTKAVGCSTLKDLIEKDKLII-HHRATIQEFRTFSEK---GVS--WAA-EEGYHDDLVMSLVIFG------- | |||||||||||||
10 | 4idhA | 0.09 | 0.07 | 2.66 | 1.36 | SPARKS-K | PIFEPFI-----------EAHRYKVAKGGRGSGKSWAIARLLVEAAR-----RQPVRILCARELQNSISDVIRLLEDTIEREG-----YSAEFEIQRSMIRHLGTNAEFMFYGNNPTKIKSLEIDICWVEEAEAVT-KESWDILIPTIRK-PFSEIWVSFNP-KNILDDTYQRFV--------VNPPDDICLLTVN-------------YTDNPHFP---------EVLRLEMEECKRRN--PTLYRHIWLGEPVSASDMAIIKREWLEAATDLGWKAKGA-VVSAHDPSDTGDAKGYASRHGS----VVKRIAEGLLM----------------------------------DINEGADWATSLAIEDG--ADHYLWDGDGGAGLRRQTTEAFKKITATMFKGSESKRAQFYYALADRLYLTMLSFDKLEKLFAELTQIQRKFNNNGKLELMTKLGIPSPNLADALMMCMHCPALVR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |