>PF03339 (315 residues) NNRYQDKHYEKNVANKPRKETNESTKTCGYEDFITQRLHLHERESRDLECNAIVVNCMLK QAGKEETECWIELSSLVRYKKALGFPLLRGYKQFSYGKMLYFEQFKYTTVEKLTPQTLCI TDAILFQIVVILYSMYKKEIYADEFVFELVTIPRSTFHISVNQLVFDTCTDKLVVLSLCT RPYKAKLPQSCYLNYIHWFNTTAKKSYETSNYFFEWLIKNHLRYLHKDGVDLFKIRKRTV SGPRINRFIDPGTVVLVARDDMFVAGVTLTNVSISDNVRILFSLDGGNILEIDDFSIYDV YSHGEFFIRSQLTSI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NNRYQDKHYEKNVANKPRKETNESTKTCGYEDFITQRLHLHERESRDLECNAIVVNCMLKQAGKEETECWIELSSLVRYKKALGFPLLRGYKQFSYGKMLYFEQFKYTTVEKLTPQTLCITDAILFQIVVILYSMYKKEIYADEFVFELVTIPRSTFHISVNQLVFDTCTDKLVVLSLCTRPYKAKLPQSCYLNYIHWFNTTAKKSYETSNYFFEWLIKNHLRYLHKDGVDLFKIRKRTVSGPRINRFIDPGTVVLVARDDMFVAGVTLTNVSISDNVRILFSLDGGNILEIDDFSIYDVYSHGEFFIRSQLTSI | |||||||||||||||||||
1 | 4r04A3 | 0.12 | 0.10 | 3.70 | 0.71 | SPARKS-K | YSEHITKEISTIKNSIITDVNGQLDHTSQVNTLNAAFFIQSLIDYNKDVLNTSVKVQLYAQLFSTGLNTIIQLVNLISNAVNDTINVL---PTITEGI------PIVSTILDGI------------NLGAAIKELLDEGVLAIAEDINVFMKDDINTITGKYSIDFSISLVKVNGLYLN---------ESVYSSYLDFVKNSDGHTSNFMNLFLDNIS--FWKLFGFENIN-FVIDKYKTNL---------GYVEFICDNNKYFGEWKSTIFSGNGRNVVVEPIYNSTSLDFSYLYINKVLIAPLININTNYYSN | |||||||||||||
2 | 2ej9A | 0.13 | 0.08 | 2.85 | 0.57 | FFAS-3D | -----------------------------------------------------------------------TNDYAKELAKEGKRNFIVLADKQNNGKGLYFS---------MVLDSKLYNPKVINLLVPICIIEVLKNYVDKELGLDIM-VKVNDNYKKLGGILTELTDDYMIIINVNNQ------IRNEIREIAISLKEITGKELDKVEILSNFLFESYLEKLKNKEIDDYEILKKY-----KKYSITIGKQVKILSNNEIITGKV---YDIDFDGIVLGTEKGGICIHV----------------------- | |||||||||||||
3 | 4ii1A | 0.17 | 0.07 | 2.20 | 0.34 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------VSAPYYTL-EYHNAMVVGTEEAAGVRVLYLYPTHKSLKPCPFFLE------GKCRFK-ENCRF-------SHGQVVSLDEL------RPFQDPD--LSSLQAGSACLAKHQDGLWHAARITDVD-NGYYTVKFDSLLLAVVEGDG-----ILPP------------ | |||||||||||||
4 | 5n8oA | 0.10 | 0.10 | 3.63 | 0.66 | MUSTER | SVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN--LKQDERLSGELITGRRQLLEGM--AFTPGSTVIVDQGLKETLTLLDGAARHNVQV--LITDSGQRTGTGSALMAMK---DAGVNTYRW-QRPATIISEPDRNVRYARLAGDFAASVKAGEESQAILTQAIRSELKTQLGHPEVTMTALSPVWLDSRYLRDMYRPGMVMEQWNPETSHDRYVIDRVTAQSHSLTLRDAQGTQVVRISSLDSSSLFRDGELRVTGKIPGL | |||||||||||||
5 | 4fltA | 0.12 | 0.07 | 2.46 | 0.77 | CNFpred | -------------------------------DYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGRQYIDLVRRELESRGFKVLYID-----TDGLYATIP-GAKHEEI--------KEKALKFVEYINSKLPGLL---ELEYEGFYA---RGFFVTKKKYALIDEGKIVTRGLEIRRDWSEIAKETQAKVLEAILKHG------NVDEAVKIVKEVTEKLSKYEIPKLVIYEQI---------------------------------------------------------------------------- | |||||||||||||
6 | 2bkiA | 0.13 | 0.10 | 3.63 | 0.41 | HHsearch-2 | GKEERNYHYRLCAGASELSSPLKDPLLDDHGDFIRMCTAMKKI----------------GLDDEEKLDLFRVVAGVLHLGNLLGLDQDDL-RVSLTTRVMLTTAGKGTVI-----KVPLKVEQANNARDALAKTVYSHLFVVNCFP-----FETS--------------SYFIGVLDIAGEYFEHNSFQFCYCNKLQQFFNERILKEEQELYQKGVNNQDCIDLIEARLVGILSIPRKS--KLAIHRNIRD--------DEGF----IIRHFAG----AVCYETTQ--FVENDALHIRELFESSTNNNKLSFISV | |||||||||||||
7 | 3tnfB | 0.08 | 0.08 | 2.97 | 0.72 | Neff-PPAS | -DEYEQAIKRAQENIKKGEELEKKLDKLERQGDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKH---------------------KGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLK-DAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKD----QQLFNLGGKFYPIHKEQKILEKDGKF | |||||||||||||
8 | 5szoA3 | 0.25 | 0.05 | 1.68 | 0.34 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NDNRPEIIITSL---SDQISEDSPSGTVV---------ALFKVRDRDSGENAEVMCSLSGNNPFKIHSSS-------NKLVTDSILDR- | |||||||||||||
9 | 5n8oA | 0.09 | 0.09 | 3.37 | 0.70 | SP3 | SVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN--LKQDERLSGELITGRRQLLEGMA--FTPGSTVIVDQGLKETLTLLDGAARHN--VQVLITDSGQRTGTGSALMAMK---DAGVNTYRWQGGEQRIISEPDRNVRYARLAGDFAASVKAGEREQAILTQAIRSELKTQLGHPEVTMTALSPVWLDSRSRYDMYRPGVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGEQVVRISSLDSSSLFRPEKMPVADGERLR | |||||||||||||
10 | 3tnfB | 0.08 | 0.07 | 2.80 | 0.98 | PROSPECTOR2 | LDEYEQAIKRAQENIKKGEELEKKLDKLERQKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLM----------------------------EKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLLANLQDMLAVHRKEKSFFNEKGEEVTSLNDAHGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |