Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MGEQNDKLEKLISYGNEMGDLVAKVGGLFAEVNESVREVRNELPNTLIKANKYYTAIAVITKTVWNDVKAVGLDSDMAKCSRQEFSAVENFEASCGDQTCPLENSVTESSLQKYKDGCLTITILNGSVSECLNRLRDNLYRSGAVQSSRKILEWRGEDRHGAFYFQLTLEIQQIFSTLITPFAAGKPPFALLDMMANITSLNSHFNWVHGNFTSLLLDIGVAGNVSNTNST |
1 | 2pffB | 0.20 | 0.17 | 5.54 | 1.07 | HHsearch-2 | | KVGQFDQVLNLCLEGNDIHALAAKL---LQENDT------------TLVKTK--ELIKNYITARIMAKRSALFR-AVGEGNA---QLVAIFQGNTDDYFEELRD-----LYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDYLLSI--PI-SCPLITAKLLGFTPGELRSTAVAIAEWESFFVSVRKAITVLFFIVRCYEAYPNTSLP |
2 | 2pffB | 0.20 | 0.17 | 5.42 | 1.19 | HHsearch | | KVGQFDQVLNLCLEGNDIHALAAKL---LQENDTTLV-KTKE-------------LIKNYITARIMAKRPALFR-AVGEGN---AQLVAIFQGNTDDYFEELRD-----LYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTKDYLLSIP---ISCPLITAKLLGFTPGELRSTAVAIAEWESFFVSVRKAFFIGVRCYSLENNEGVPSP- |
3 | 2d4xA | 0.07 | 0.06 | 2.47 | 0.68 | SPARKS-K | | LSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYADDDRASLATDLQGIRDQLMNLAN-STDGNGRYYKTEAAPFDQATGGYHGGEKS--VTQQVD-------SARTMVIGH---TGAQIFN------------SITSNAVPEPDGSDSEKN-------LFVMLDTAIAALKTPVAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL------ |
4 | 2j0oA | 0.14 | 0.11 | 3.85 | 0.67 | FFAS-3D | | -----SQISMDVNKSAQLLDILSRHRELWAKIANSINDINEQYLHAVSSYTQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVNSLKALEELKEKYKDKPLPANNTVSQEQANKWKNGGYVVSINMTPIDNMLK-------------------SLDNLGGNGEVVLD-----NAKYQAWNAGFSA--EDETMKNNLQTLVQKYSNANSIFDNLVKVLSST------------ |
5 | 2pffB | 0.21 | 0.17 | 5.52 | 0.68 | HHpred | | KVGQFDQVLNLCLEGNDIHALAAKL---LQENDT------------TLVKTK--ELIKNYITARIMAKRPFLFR-AVGEGN---AQLVAIFQGNTDDYFEELRD-----LYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTKDYLLSIP---ISCPLITAKLLGFTPGELRSTAVAIAEWESFFVSVRKAFFIGVRCYE---AYPNTS-- |
6 | 3l9oA | 0.09 | 0.08 | 3.18 | 0.59 | MUSTER | | MRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVT----HPANALSFLQPGRLVEISVNGKDNYVVDFAKRISAVYTDHESYIVNVVVNT------MYIDSPVNLLKPFNPTLPEGIRPAEESICAVIPITLDIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKK |
7 | 2d4yA | 0.14 | 0.10 | 3.55 | 0.77 | CNFpred | | NAEDPAARQALIGKA---EGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQILDQRDQLVSEL--------KIVGVEVSVQD---------------------GGTYNLTMANGY----------TLVQG----STARQLAAVPSSAPTRTTVAYVDGNIEIPEKLLN-------TGSLGGLLTFRSQDLDQTRNTLGQLALAFADA-----FNAQHTK |
8 | 2pffB | 0.18 | 0.17 | 5.63 | 0.78 | HHsearch-2 | | QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELLSIPISCPLIGVIQLAHYVVTAKLLPGLRSYLKGATGHVAIAETDSWEFVSVLFFGVRCYEAYTSLPPSILEDSLENNESPMLSISNLTQEQVQYVHLPAGKQVEISLVNGAKNLVVLRKADQSRIPFSERKLKFSNRFLPVASPFHSHLLASDLIN------KDL-VKNNVSFNAK----DIQIPVYDTFDGSD |
9 | 2d4xA | 0.08 | 0.07 | 2.77 | 0.75 | Neff-PPAS | | LSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLDDRASLATDLQGIRDQLMNLANSTDGN--GRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQIFNS---------------ITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSL------ |
10 | 2chvA2 | 0.11 | 0.02 | 0.78 | 0.14 | HHsearch | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------DADTIYQ------ITATARPEEMTELIQT-ALKGNFMEARELLDRLMVEYGM---------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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