Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | IKEIFGNADSLYQIPRYQRPYSWGDEQLEKLWEDLVDAKENEPNYFLGSIITAKPEDKNNYLDIVDGQQRLTTLTILLCVYRDLYPEINNDILEEDPFAIDGKTVSNSIKFNDRFQRLRLRTHSNHQSDFDKLILSENATVDSKEIEKPTKQDLRKDEPKFKFKNSAFFFREKLTSIGEKEAGELLNYLFNKIKIIRIDCKSVSFAIKLFQVLNDRGLDLSNSDLIKSFL |
1 | 5cwfA | 0.10 | 0.07 | 2.73 | 0.59 | SPARKS-K | | EMKKVMEALKKAVELAKKNNDDEVAREIERAAKEIVEALREN-------------NSD-----------EMAKVMLALAKAVLLAAKNN----DDEVAREIARAAAEIVEALRENN------SDEMAKVMLALAKAVLLAAKN-----------NDDEVAREIARAAAEIVEALRENNSKKMLELAKRVLDAA-------NDDETAREIARQAAEEVEAD---------- |
2 | 5v9xA4 | 0.09 | 0.08 | 3.02 | 0.64 | FFAS-3D | | ---VYESPGQPARLPFWRGDSVGRPAELGAAVGAFTGELASLVPS-DTTFVVERFRDELGDWRVILGLRVHGPLALAVGRRLRERYGIDEKPTASDD-------GIIVRLPDSPGADLFVFDADEIEPIVTAEVGGSALFASAARALLLPRRHPGKRSPLWHQRQRAAQLLDIARKYPDPIVLEAVRECLQDVY-------DVPALIELMHKIAQRRLRIVAASLL---- |
3 | 1vz0B | 0.13 | 0.10 | 3.59 | 0.43 | HHpred | | --------ASIRPNP-RQPRKRFAEESLKELADSIREK-----G-LLQPLLVRPQ---GDGYELVAGERRYRAALMAGL------QEVPAVVKDLTDREALELALV-ENLQ-----REDLSPV-EEARGYQALLE-MGLTQEEVAR------RVGARSTVANALRLLPEALEALERITAGHARALLM------------LEPEDR-L-WLKEILEKGLSVRQAEALRERL |
4 | 5cwmA | 0.08 | 0.07 | 2.91 | 0.70 | MUSTER | | VEKLVKEAEELLRQAK-------SEEDLEKALRTAEEAAREAKK-----VLEQAEKEGDPEVA----LRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEK---GDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERISGSEEAKERAERVREEARELQRVKELRER- |
5 | 4wesA | 0.09 | 0.06 | 2.32 | 0.59 | CNFpred | | ---------SINVLGEYNIG--GDAWEMDRVLEKIGYHV---NATLTGDATYEKVQNAKADLNLVQ---CHRSINYIAEMMETKYG------------------------------IPWIKCNFGIVETLRDMAKCF---------------------DDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGG---SRSHTYMNMLKSFGVDSL---VAGFEF |
6 | 1vt4I | 0.12 | 0.10 | 3.68 | 0.74 | HHsearch-2 | | --------------------MDFETGEHQYQYKDILSVFEDDVQDMPKSILSKEEIHIIMSKDAVSGTLRLFWTLLNYKFLMSPIKTEQRQPSMMTRMSRLQPYLKLLLELRPDFKIFWLNLKNSPEMLQKLLYQIDPNWTSRS---------DHSSNIKLRIHSIQAELRRLLKSKNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATLDHHSMTLTPDE-VKSLL |
7 | 2yfaA | 0.07 | 0.07 | 2.84 | 0.91 | Neff-PPAS | | LNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTF---------KSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIRSDALYQIQL |
8 | 2b6fA | 0.11 | 0.05 | 1.72 | 0.82 | HHsearch | | GGSIHSRIAAVHNIRPLPS--VLDPAKVQSLVDTIREDPD-----SVPPIDVLWIKGGGDYFYSFGGCHRYAAYQQLQR------ETIPA---------------------------KLVQS--TLSDLRVYLGASTPDLQ----------------------------------------------------------------------------------------- |
9 | 1wp9A | 0.11 | 0.08 | 3.01 | 0.59 | SP3 | | VRPYVKGIRFEWV-----------REIYKEVRKLLREMLRDETG------LLESSSPDIP-----------------KKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIE---LLETQGLSALRAYIKKL--YEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEILDHPKMDKLKEIIREQLQNSK-IIVFTNYRETAKKIVNELVKDGIK----------- |
10 | 2plrA | 0.10 | 0.08 | 2.87 | 0.71 | PROSPECTOR2 | | LKDWIELKRDVYLTEWAKKKDLLTPLTFSLIHATDFSDRYERYI----------LPLKSGFIVISDR-------YIYTAYARDS-------------VRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIK-----PQEAGADIFPGLSPEEGFLKYQ-----------GLITEVYDKLVKDENFIVIDGTKTPKQIQIRKFVG---------ELIDNSF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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