>PF03225 (509 residues) SPIVDEFLKFFFKRSDVSNQKRQLCEYLLKNSATENRNTYRANAGNKMISFDSNYRVSNG VVFIDDTSDLELLKLAIIYMYRVDRSLLKKTNYRPENFFASLDWRRSSREFSPFYSGDMN DYLAANNEIGCTYTEKDIKDHYPNISELRALTLYRVCNSLGKYIDLKTLESGSVKGFSIS TSAEDGGIGEGLTANKLFSECLKIFRVYLSLSTTKAGIAKISVNKRYFETFFTSLDSHSD LSKLKSNPLVIAFFINSFDKLTVDSTGFKDNFRAIKQLEKPFRKFLKDVFLIDSSFSEET LFINLPKTSVSEILQEPTMVSEFVRKDDSISLESVANTLPDSTDNSVTEWIHTFLARKGD IPKHRLTDALLFILGRYTTNIKRLVQPNDVGITIEGKRVTFKMSELNSFVVNRSVRNYPE LKGINVLRQWANKRSYRALTLFRSANFDPGLFSNVPGILPYMRFDFYKAIPLSQMSQQEV ESFRTLRLVTEAKSDASASSISDCKQWIL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SPIVDEFLKFFFKRSDVSNQKRQLCEYLLKNSATENRNTYRANAGNKMISFDSNYRVSNGVVFIDDTSDLELLKLAIIYMYRVDRSLLKKTNYRPENFFASLDWRRSSREFSPFYSGDMNDYLAANNEIGCTYTEKDIKDHYPNISELRALTLYRVCNSLGKYIDLKTLESGSVKGFSISTSAEDGGIGEGLTANKLFSECLKIFRVYLSLSTTKAGIAKISVNKRYFETFFTSLDSHSDLSKLKSNPLVIAFFINSFDKLTVDSTGFKDNFRAIKQLEKPFRKFLKDVFLIDSSFSEETLFINLPKTSVSEILQEPTMVSEFVRKDDSISLESVANTLPDSTDNSVTEWIHTFLARKGDIPKHRLTDALLFILGRYTTNIKRLVQPNDVGITIEGKRVTFKMSELNSFVVNRSVRNYPELKGINVLRQWANKRSYRALTLFRSANFDPGLFSNVPGILPYMRFDFYKAIPLSQMSQQEVESFRTLRLVTEAKSDASASSISDCKQWIL | |||||||||||||||||||
1 | 5dlqB1 | 0.12 | 0.10 | 3.53 | 1.27 | FFAS-3D | -AQLENAAKVLMAPPSMNEQRQHAEHIFLS--FRKSKSPFA----------------VCRHILETSKVDYVLFQAATAIMEAVVREWVLLEKGSIESLRTFLTYVLQRPNLQKYVREQILLAVAVDKSIDCKSIFHEVSQLISSGNPTVQTLACSILTAL-----LSEFSNCKRV-------------FQEEDLRQIFMLTVGVLQEFSRRENLSAQMSSVF--QRYLALANQVLSPTESWREALLDSRVMELFFTVHRKIREDSDMAQDSLQCLAQLAGSQVDYLAHFIE-----GLLNTINGIEIED-----SEAVGISSIISNLITVFPRNVLTAIPSELFSSFVNCLTHLTCSKDDMVYMEAYDKLLESWLTLVRL------------------FLATRHFLKLVFDMLVLQNTEMTTAATLVCLYQAEYSELVETLLSSQQ-DPVIYQRLADAFNKLASS----------TPDRKQKMAFLKSLEEFMAN---------VGGLL | |||||||||||||
2 | 2x19B | 0.09 | 0.07 | 2.87 | 1.23 | CNFpred | RVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEE-----------------------------PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-SNVQLADTVMFTIGALSEWLADHPVM-INSVLPLVLHALGNLSVSSVSTLKKICRECKYDLYAANIVAVSQDVLMKQIH-----------KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEINPSNKLAIVHILGLLSNLFTTLDISH-VLQQVFQLIQKVL-AVCAIFEKSVKTLFAPMVPQLCEMLGMYSTIPQASALDLTRQLVHIFA--HEPAHFPPIE-ALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK---------PDLFL---CERLDVKAVFQCAVLALK---------FPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKH-------CFSLLSMWIK | |||||||||||||
3 | 1vt4I | 0.13 | 0.10 | 3.50 | 1.04 | HHsearch-2 | VSGTLRLFWTLLSKQEVEEVLRINYKFLMSPIKTEQRRLYNDVSGSGKMDFIFWLNL------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSIKLRIHSI-----QAELRRL--------LKSKPYENCLL-------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--AATTTHI----SLDHHSMTLTPDEVKSLLLKYL-----------------------DCRPQDLPREVLTTNPRRLSIIAESIRDGLAFPPTILLSLIWFDVIKSDVMVVVNKLHKYSLVPKESTISIPSIYLEKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLQYFYSHIGHHL---KNIEHPER-MTLF-------------------------------RMVFLDFRFLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLRIALMAE-----D----EAIFEEAHKQVQR | |||||||||||||
4 | 1b3uA | 0.09 | 0.08 | 3.26 | 1.34 | Neff-PPAS | -LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTF----------TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAI-REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL | |||||||||||||
5 | 5fn1A | 0.10 | 0.04 | 1.31 | 1.22 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAKAPSDFSNPNTAPS--LSDLKKVK-YVSTVTSVATPAEIEALGKIF-----TAMGLNETGPAMWDLARAYADVQSS-KSAQLIGATP--S-N--PALSRRALAAQFD-------RINIT---PRQFCMYFAKVVWNILLDSNIPPANWAKYQEDTKFAAFDFFDGVTIRQPNEKELAAHSVAKYGALARQKTGNYILGEVTAID- | |||||||||||||
6 | 4uzyA | 0.08 | 0.07 | 2.74 | 1.24 | PROSPECTOR2 | EGQYTQTIYTLIKEQKFAEAIQHLQYQLQNV----------------------------------PESRAALSLLGYCYYYTGQYDLVTLYPSNEDYKLYHQKAVTTLLVACSYEQDDLTGCRRQLDKCAPEDPDEAARQKFNDYQPELLYNIALCYYKTKQIIEKAVREHPELSVGSDGMEVRSVGNSQTLKETALIEAFNLKAAIEYTMKNVEAAKEEEELDPVTLHNSALINMDSDPLQSPPFPPETFANLLLLY--CKPSHGFYDLAADVLAENPQYAGKLYDYLQAAIGRYKSPEEAFRRFDELATRHVEQLRRLTKQIQDARIARDNDAIKRAINEYDEALEAYIPGLMAAEFCSEHEVWKLNVAHTFFMQDNH----------------------YKEAIRYYEPVVKKNADNLLGVTAIVLANTSQNEEAEELMRKVEKEEERSSMQDPDKPCFHLCIINLVETDTWYYAKRCFLALIENLAKHMIVLKDSSFTEIMAFLR | |||||||||||||
7 | 4f52E | 0.13 | 0.11 | 3.69 | 1.17 | FFAS-3D | -EELQSIIKRCQILEGLFQLADQLLEIIQKNKVIIKNMGW------------------------------NLVGPVVRCLLCKDKDLLVKLCNPKELLLGLLELIEEPS--GKQISQSILLLLQ---------PLQTVIQKLHNKAYSIGLALSTLWNQLSLL-------------------PVPYSKMDDYGLCQCCKALIEFTKPFVEEDNKENSLENEKLKDELLKFCFKSLAIGHPFPKMKQLADSMASLAYLVFVQGIHIDQLQFNMGHIEVFLSKGLELLENSLLRDNSLLYQYL-------EIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYSQGKYTLFRCLLNTSN--HSGVEAFIIQNIKNQIDMSLKR---------------KWFTGPQLISLLDLVLFLPEGAETDLNSDRIM---ASLNLLRYLVIKDNENDNQTGLWTELGNIENNFLKPL-HIGLNMSKAHYEAEIKNSQEAQKSKDPPEMQDLIESVL | |||||||||||||
8 | 4hb2C | 0.09 | 0.08 | 2.90 | 1.23 | CNFpred | LDYWHNLVADLFYE-IYEEICSQLRLVIIENMVRP--------------EEVLVVENDEGEIVREFVKESDTIQLYKSEREVL-------------VYLTHLNVIDTEEI-----------------------MISKLARQIDGWSWHNINTLSWAIGSISGTMSEDT-------------------------EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA----HWNFLRTVILKLFEFMHE---HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKLQPQQVHTFYKACGIIISEERVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVALIATKTPKVRGLRTIKKEILKLVETYISKANLDDVVKVLVEPLLNAVLEDYMNNVPDA----RDAEVLNCMTTVVEKVGHMIPQGVILILQSVF | |||||||||||||
9 | 1vt4I | 0.12 | 0.10 | 3.62 | 1.04 | HHsearch-2 | QYQYKDILSVFE-DAFVDNFDCKDVQDM-------------------------------------PKSILSKEEIDHIIMSK---DAVSGTLRLFWTLLSKQEEMVQ---------KFVEEVLR----INYKFLMSPIKQRQPSMTRMYIEQRDRLYNDNQVFKYPYLKLRQALMDFKIFWLN----L---KNCNSPETVLEMLQKLLYQISDSSNIKLRIHSIQAELRRLLKSKPYENCLLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPTNPRRLSIIAESIRDATWDVNCDKLTTIIESSLNVLPAEYRKMFDVFPPSAHIPTILLSLIWFDVI-KSDVMHKYSLVEKQPKTISIPSIYLESIVDHYNIPKTFDSDIPPYLDQYFYSHIGHH-----LKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWSGNTLQQLKFYKPYICDNDPKYERLVNAILD | |||||||||||||
10 | 5mqfM | 0.06 | 0.05 | 2.36 | 1.30 | Neff-PPAS | SPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKAT------------KVNFKQVDDLASVWCQCGELELRHEN----YDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLAVYDRILDLRIATPQIVINYAMFLEEHFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGR--------------------KLERARDLFEQALDGCPPKYAKTLAQLEEEWGLARHAMAVYERA-TRAVEPAQQYDMFNIYIKRAAEIYGIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |