>PF03209 (410 residues) TLNRVMIVELGVPASIVAVMVALPLLFAPFRALIGFKSDNHQSALGWRRVPYIWKGTLLQ FGGFAMMPFALLVLSGGGESGALPTWVGQLGAAVAFLLVGAGMHTVQTVGLALATDLAEP EARPKVVGLMYVMLLLGTIVSAFFFGWLLADFTPAKLIQVIQGAALTTMILNVLALWKQE SRHPRRGAQRHDDDPSFVEAWRHFVGNGNQVVRRLLTIGLGTAAFTMEDVLLEPYGGQVL GLTVGDTTKLTATLALGGLFGFGLASKVLSRGMDPFRMACWGALVGIPAFIFVIIAAPMN SPFVFAAGVALIGFGGGLFGHGTLTATMNLAPPNQAGLALGAWGAVQATAAGLAMALGGI LRDLVQAFVTWHPWTHWISIPATGYVFVYLLELVILLAAIAAMVPLIGRQ |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TLNRVMIVELGVPASIVAVMVALPLLFAPFRALIGFKSDNHQSALGWRRVPYIWKGTLLQFGGFAMMPFALLVLSGGGESGALPTWVGQLGAAVAFLLVGAGMHTVQTVGLALATDLAEPEARPKVVGLMYVMLLLGTIVSAFFFGWLLADFTPAKLIQVIQGAALTTMILNVLALWKQESRHPRRGAQRHDDDPSFVEAWRHFVGNGNQVVRRLLTIGLGTAAFTMEDVLLEPYGGQVLGLTVGDTTKLTATLALGGLFGFGLASKVLSRGMDPFRMACWGALVGIPAFIFVIIAAPMNSPFVFAAGVALIGFGGGLFGHGTLTATMNLAPPNQAGLALGAWGAVQATAAGLAMALGGILRDLVQAFVTWHPWTHWISIPATGYVFVYLLELVILLAAIAAMVPLIGRQ | |||||||||||||||||||
1 | 4zowA | 0.13 | 0.11 | 3.91 | 2.96 | SPARKS-K | PGMLAVVEQYQAGIDWVPTSMTAYLAGGFLQWLLGPLSDRIG------RRPVMLAGVVWFIVTCLAILLA-----QN-----------IEQFTLLRFLQGISLCFIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSL-----KELGRDYKLVLKN-GRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLT-SRRTVRSLIIMGGWPIMIGLLVAAAATVIHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMS-KGTVSAAMGMLQMLIFTVGIEISKHAWLNGGNGLFNLFNLVNGILWLSLMVIFLK-------------------- | |||||||||||||
2 | 3wdoA | 0.15 | 0.13 | 4.49 | 3.26 | FFAS-3D | -LTTYGMALQGASEALIGIAIGIYGLTAVFQIPFGLLSDRIG------RKPLIVGGLAVFAAGSVIAALS----------------DSIWGIILGRALQGSG--AIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVK-------GSFSKVLAEPRLLKLNFGIMCLHMLLMSTFVALPGQLAD-AGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNA--QTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFD------------------GQGVFLAGAMLAAVWLAVASTMKE-- | |||||||||||||
3 | 4zowA | 0.14 | 0.12 | 4.23 | 3.92 | HHpred | PGMLAVVEQYQAGIDWVPTSMTAYLAGMFLQWLLGPLSDRIG------RRPVMLAGVVWFIVTCLAILL-----AQ-------NIE----QFTLLRFLQGISLCFIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEG---MFVLFAALAAISFFGLQAMPETATRIGEK---LSLKELGRDYKLVLKN-GRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLAR-LTSRRTVRSLIIMGGWPIMIGLLVAAAAISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASD-MSKGTVSAAMGMLQMLIFTVGIEISKHAWLNG------------------GNGLFNLFNLVNGILWLSLMVIFLK-- | |||||||||||||
4 | 3wdoA | 0.15 | 0.13 | 4.42 | 2.00 | MUSTER | PVLTTYGMALGASALIGIAIGIYGLTQAVFQIPFGLLSDRIG------RKPLIVGGLAVFAAGSVIAALS-----------------SIWGIILGRALQGSG--AIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVV------PNSSTHVLNRESGMVKGSFSKVLAE-PRLLKLNFGIMCLHMLLMSTFVALPGQLADA--FPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQ--TQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMF------------------DGQGVFLAGAMLAAVWLAVASTMKEPP | |||||||||||||
5 | 4zp0A | 0.14 | 0.12 | 4.17 | 2.16 | CNFpred | PGMLAVVEQYQAGIDWVPTSMTAYLAGGMLQWLLGPLSDRIG------RRPVMLAGVVWFIVTCLAILLA----------------QNIEQFTLLRFLQGISLCFIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQ--RAMPETATRIGEKLS---LKELGRDYKLVLK-NGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTS-RRTVRSLIIMGGWPIMIGLLVAAAATVSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDM-SKGTVSAAMGMLQMLIFTVGIEISKHAWLN------------------GGNGLFNLFNLVNGILWLSLMVIFLK-- | |||||||||||||
6 | 4zowA | 0.14 | 0.13 | 4.30 | 1.10 | HHsearch-2 | PGMLAVVEQYQAGIDWVPTSMTAYLAGMFLQWLLGPLSDRIG------RRPVMLAGVVWFIVTCLAILLA-----QN-------IE----QFTLLRFLQGISLCFIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEG---MFVLFAALAAISFFGLQAMPETATRIGEK---LSLKELGRDYKLVLKN-GRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLAR-LTSRRTVRSLIIMGGWPIMIGLLVAAAAISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASD-MSKGTVSAAMGMLQMLIFTVGIEISKHAWLNG------------------GNGLFNLFNLVNGILWLSLMVIFLK-- | |||||||||||||
7 | 5aymA | 0.16 | 0.14 | 4.65 | 2.57 | Neff-PPAS | -VPFALLVIFPGKLQVAAFYYLIVKIGTFLTPSSGKWIDTHP------RIQVVKWGVWLQFFAILAGMVFFGMLDGLVRAGGRLSVLFIALALSGVMASLGSQITDISVGNDLAPSLVAPEKLTHFNSWLRRIDLATEVGAPILAGALFPLAGLFLIGLWNLVSFVPEYFLLRNVIQRSGLKIKVLGSFS-----------------DPIFWLILSYALLWLSVLSPHGVLLAAYLKDEMRLPETEIGLFRGLGAVFGLISTVSFPYLVRR-LGLISSSRWHLGFQGVTLGIAVTAFATASVYVFLGCILLSRVGLYGFSNGEFELRQRLIPEGRRGELNSLSSLTTTSATLILFSAGSLL------------------PQTEDFKYLVYVSLAAVLLANVVFIKWSSR- | |||||||||||||
8 | 4zowA | 0.14 | 0.13 | 4.30 | 1.77 | HHsearch | PGMLAVVEQYQAGIDWVPTSMTAYLAGMFLQWLLGPLSDRIG------RRPVMLAGVVWFIVTCLAILLA-----QN-------IE----QFTLLRFLQGISLCFIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEG---MFVLFAALAAISFFGLRAMPETATRIGEK---LSLKELGRDYKLVLKN-GRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLAR-LTSRRTVRSLIIMGGWPIMIGLLVAAAAISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASD-MSKGTVSAAMGMLQMLIFTVGIEISKHAWLNG------------------GNGLFNLFNLVNGILWLSLMVIFLK-- | |||||||||||||
9 | 4zowA | 0.14 | 0.12 | 4.17 | 2.64 | PROSPECTOR2 | RGMLAVVEQYQAGIDWVPTSMTAYLAGMFLQWLLGPLSDRIG------RRPVMLAGVVWFIVTCLAILL-----AQN-----------IEQFTLLRFLQGISLCFIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFF--GLQRAMPETATRIGEKLS---LKELGRDYKLVLKN-GRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLAR-LTSRRTVRSLIIMGGWPIMIGLLVAAAATSSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMS-KGTVSAAMGMLQMLIFTVGIEISKHAWLNGG------------------NGLFNLFNLVNGILWLSLMVIF--LK | |||||||||||||
10 | 1pw4A | 0.13 | 0.12 | 4.04 | 3.49 | SAM | ---PYL-VEQGFSRGDLGFALSGISIYGFSKFIMGSVSDRSN------PRVFLPAGLILAAAVMLFMGF-----VSS-------IA----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWNDWHA---ALYMPAFCAILVALFAFMMRDTPQSCGLPPIEEYKNAKQIFMQYVLPN-KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW-MSDKVGNRGATVFFMTLVTIATIVYWMNP-AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAASAIVGYTVD------------------FFGWDGGFMVMIGGSILAVILLIVVMIGE | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |